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    EMB embigin [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702068, updated on 17-Aug-2024

    Summary

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    Official Symbol
    EMBprovided by VGNC
    Official Full Name
    embiginprovided by VGNC
    Primary source
    VGNC:VGNC:72144
    See related
    Ensembl:ENSMMUG00000016149
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See EMB in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (48533780..48589151, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (51075189..51127623, complement)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S30 Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 1 Neighboring gene dnaJ homolog subfamily C member 8 Neighboring gene small nucleolar RNA SNORA31 Neighboring gene translation initiation factor IF-2, mitochondrial pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell-cell adhesion mediator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in dendrite self-avoidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    embigin
    Names
    embigin homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      48533780..48589151 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015140061.2 → XP_014995547.1  embigin isoform X2

      UniProtKB/TrEMBL
      F7FTT3, G7MTP6
      Related
      ENSMMUP00000021235.3, ENSMMUT00000022700.4
      Conserved Domains (3) summary
      cd00096
      Location:150 → 224
      Ig; Immunoglobulin domain
      smart00410
      Location:145 → 227
      IG_like; Immunoglobulin like
      cl11960
      Location:55 → 116
      Ig; Immunoglobulin domain

    2. XM_001093157.4 → XP_001093157.1  embigin isoform X1

      UniProtKB/TrEMBL
      A0A5F8AML7, G7MTP6
      Related
      ENSMMUP00000078292.1, ENSMMUT00000099965.1
      Conserved Domains (3) summary
      cd00096
      Location:178 → 252
      Ig; Immunoglobulin domain
      smart00410
      Location:173 → 255
      IG_like; Immunoglobulin like
      cl11960
      Location:83 → 144
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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