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    PDCD2 programmed cell death 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696380, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PDCD2provided by VGNC
    Official Full Name
    programmed cell death 2provided by VGNC
    Primary source
    VGNC:VGNC:104419
    See related
    Ensembl:ENSMMUG00000019916
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PDCD2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (71937..79154)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (171949416..171958383)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC717853 Neighboring gene uncharacterized LOC114677426 Neighboring gene TATA-box binding protein Neighboring gene proteasome 20S subunit beta 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    programmed cell death protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      71937..79154
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015137751.2 → XP_014993237.1  programmed cell death protein 2 isoform X2

      Conserved Domains (1) summary
      pfam01753
      Location:135 → 172
      zf-MYND; MYND finger

    2. XM_001086513.4 → XP_001086513.1  programmed cell death protein 2 isoform X1

      UniProtKB/TrEMBL
      F7GNT2, H9F3J2
      Related
      ENSMMUP00000026174.4, ENSMMUT00000027978.4
      Conserved Domains (2) summary
      pfam01753
      Location:135 → 172
      zf-MYND; MYND finger
      pfam04194
      Location:223 → 339
      PDCD2_C; Programmed cell death protein 2, C-terminal putative domain

    3. XM_015137752.2 → XP_014993238.1  programmed cell death protein 2 isoform X3

      Conserved Domains (1) summary
      pfam01753
      Location:135 → 172
      zf-MYND; MYND finger

    RNA

    1. XR_003728696.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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