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    RORA RAR related orphan receptor A [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 704014, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RORAprovided by VGNC
    Official Full Name
    RAR related orphan receptor Aprovided by VGNC
    Primary source
    VGNC:VGNC:76717
    See related
    Ensembl:ENSMMUG00000018192
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RORA in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (36950664..37694373, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (37102237..37848816, complement)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S10-like Neighboring gene interactor of little elongation complex ELL subunit 2 Neighboring gene cytochrome c-like Neighboring gene uncharacterized LOC106999195 Neighboring gene uncharacterized LOC114679717 Neighboring gene uncharacterized LOC114679716 Neighboring gene uncharacterized LOC106999205 Neighboring gene uncharacterized LOC114679423 Neighboring gene uncharacterized LOC106999198

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear receptor ROR-alpha

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      36950664..37694373 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015142369.2 → XP_014997855.2  nuclear receptor ROR-alpha isoform X1

      UniProtKB/TrEMBL
      A0A1D5QF05
      Conserved Domains (2) summary
      cd06939
      Location:272 → 511
      NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
      cd06968
      Location:66 → 160
      NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

    2. XM_001100971.4 → XP_001100971.2  nuclear receptor ROR-alpha isoform X2

      UniProtKB/TrEMBL
      A0A1D5QF05, F7E9M0
      Related
      ENSMMUP00000023930.3, ENSMMUT00000025576.4
      Conserved Domains (2) summary
      cd06939
      Location:217 → 456
      NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
      cd06968
      Location:11 → 105
      NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers
    Nucleotide Protein
    Heading Accession and Version

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