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    TARBP1 TAR (HIV-1) RNA binding protein 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712397, updated on 5-Mar-2024

    Summary

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    Gene symbol
    TARBP1
    Gene description
    TAR (HIV-1) RNA binding protein 1
    See related
    Ensembl:ENSMMUG00000021703
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TARBP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (14560809..14644669)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (210663141..210747443, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114678854 Neighboring gene U8 small nucleolar RNA Neighboring gene interferon regulatory factor 2 binding protein 2 Neighboring gene cytochrome c oxidase assembly factor 6 Neighboring gene uncharacterized LOC114678863

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA (guanine) methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable methyltransferase TARBP1
    Names
    putative methyltransferase TARBP1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      14560809..14644669
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001102931.3 → XP_001102931.3  probable methyltransferase TARBP1 isoform X1

      UniProtKB/TrEMBL
      A0A5F8AFA5, F7EZY1
      Related
      ENSMMUP00000028576.4, ENSMMUT00000030535.4
      Conserved Domains (2) summary
      cl02246
      Location:72 → 109
      DUF2285; Uncharacterized conserved protein (DUF2285)
      cd18091
      Location:1464 → 1608
      SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

    2. XM_015126407.2 → XP_014981893.2  probable methyltransferase TARBP1 isoform X2

      UniProtKB/TrEMBL
      A0A5F8AFA5
      Conserved Domains (2) summary
      cl02246
      Location:72 → 109
      DUF2285; Uncharacterized conserved protein (DUF2285)
      cd18091
      Location:1463 → 1607
      SpoU-like_TRM3-like; SAM-dependent tRNA methylase related to TRM3

    RNA

    1. XR_001441775.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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