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    SEPSECS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 693433, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SEPSECSprovided by VGNC
    Official Full Name
    Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthaseprovided by VGNC
    Primary source
    VGNC:VGNC:100268
    Locus tag
    EGK_15619
    See related
    Ensembl:ENSMMUG00000019784
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    SLA/LP
    Orthologs
    human mouse all
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    Genomic context

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    See SEPSECS in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (24072436..24112666, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (24515610..24556162, complement)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat LGI family member 2 Neighboring gene uncharacterized LOC114678138 Neighboring gene uncharacterized LOC114678265 Neighboring gene U7 small nuclear RNA Neighboring gene U2 spliceosomal RNA Neighboring gene phosphatidylinositol 4-kinase type 2 beta

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables O-phosphoseryl-tRNA(Sec) selenium transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in conversion of seryl-tRNAsec to selenocys-tRNAsec IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in selenocysteine incorporation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    O-phosphoseryl-tRNA(Sec) selenium transferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      24072436..24112666 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001082141.4 → XP_001082141.3  O-phosphoseryl-tRNA(Sec) selenium transferase isoform X1

      UniProtKB/TrEMBL
      A0A8J8YKH8, F7G5F9, G7MSN9, H9F756
      Related
      ENSMMUP00000026017.2, ENSMMUT00000027810.4
      Conserved Domains (1) summary
      TIGR03531
      Location:12 → 458
      selenium_SpcS; O-phosphoseryl-tRNA(Sec) selenium transferase

    2. XM_028848375.1 → XP_028704208.1  O-phosphoseryl-tRNA(Sec) selenium transferase isoform X2

      UniProtKB/TrEMBL
      H9F756
      Conserved Domains (1) summary
      TIGR03531
      Location:1 → 398
      selenium_SpcS; O-phosphoseryl-tRNA(Sec) selenium transferase

    3. XM_028848374.1 → XP_028704207.1  O-phosphoseryl-tRNA(Sec) selenium transferase isoform X2

      UniProtKB/TrEMBL
      H9F756
      Conserved Domains (1) summary
      TIGR03531
      Location:1 → 398
      selenium_SpcS; O-phosphoseryl-tRNA(Sec) selenium transferase

    RNA

    1. XR_001444708.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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