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    SNRPA small nuclear ribonucleoprotein polypeptide A [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702730, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SNRPAprovided by VGNC
    Official Full Name
    small nuclear ribonucleoprotein polypeptide Aprovided by VGNC
    Primary source
    VGNC:VGNC:77674
    Locus tag
    EGK_10636
    See related
    Ensembl:ENSMMUG00000022024
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SNRPA in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (39971541..39986800)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (36515110..36530814)

    Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene coenzyme Q8B Neighboring gene U6 spliceosomal RNA Neighboring gene inositol-trisphosphate 3-kinase C Neighboring gene actin maturation protease Neighboring gene MIA SH3 domain containing Neighboring gene RAB4B, member RAS oncogene family

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables U1 snRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U1 small nuclear ribonucleoprotein A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257505.1 → NP_001244434.1  U1 small nuclear ribonucleoprotein A

      See identical proteins and their annotated locations for NP_001244434.1

      Status: PROVISIONAL

      Source sequence(s)
      JU320456
      UniProtKB/TrEMBL
      A0A1D5Q8H4, A0A8J8YH87, F7GVF3, G7NLI0
      Conserved Domains (2) summary
      cd12477
      Location:7 → 95
      RRM1_U1A; RNA recognition motif 1 (RRM1) found in vertebrate U1 small nuclear ribonucleoprotein A (U1A)
      cd12480
      Location:197 → 282
      RRM2_U1A; RNA recognition motif 2 (RRM2) found in vertebrate U1 small nuclear ribonucleoprotein A (U1 snRNP A or U1-A or U1A)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041772.1 Reference Mmul_10 Primary Assembly

      Range
      39971541..39986800
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015123962.2 → XP_014979448.1  U1 small nuclear ribonucleoprotein A isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q8H4, A0A8J8YH87, F7GVF3, G7NLI0
      Conserved Domains (2) summary
      cd12477
      Location:7 → 95
      RRM1_U1A; RNA recognition motif 1 (RRM1) found in vertebrate U1 small nuclear ribonucleoprotein A (U1A)
      cd12480
      Location:197 → 282
      RRM2_U1A; RNA recognition motif 2 (RRM2) found in vertebrate U1 small nuclear ribonucleoprotein A (U1 snRNP A or U1-A or U1A)

    2. XM_015123965.2 → XP_014979451.1  U1 small nuclear ribonucleoprotein A isoform X2

      Conserved Domains (3) summary
      TIGR01628
      Location:2 → 177
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd12480
      Location:147 → 232
      RRM2_U1A; RNA recognition motif 2 (RRM2) found in vertebrate U1 small nuclear ribonucleoprotein A (U1 snRNP A or U1-A or U1A)
      cl17169
      Location:1 → 49
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_015123963.2 → XP_014979449.1  U1 small nuclear ribonucleoprotein A isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q8H4, A0A8J8YH87, F7GVF3, G7NLI0
      Related
      ENSMMUP00000044342.2, ENSMMUT00000065479.2
      Conserved Domains (2) summary
      cd12477
      Location:7 → 95
      RRM1_U1A; RNA recognition motif 1 (RRM1) found in vertebrate U1 small nuclear ribonucleoprotein A (U1A)
      cd12480
      Location:197 → 282
      RRM2_U1A; RNA recognition motif 2 (RRM2) found in vertebrate U1 small nuclear ribonucleoprotein A (U1 snRNP A or U1-A or U1A)
    Nucleotide Protein
    Heading Accession and Version

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