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    ATG3 autophagy related 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 708305, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ATG3provided by VGNC
    Official Full Name
    autophagy related 3provided by VGNC
    Primary source
    VGNC:VGNC:70105
    Locus tag
    EGK_11288
    See related
    Ensembl:ENSMMUG00000014232
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ATG3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (163616400..163645270)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (33599828..33628719, complement)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 80 Neighboring gene solute carrier family 35 member A5 Neighboring gene B and T lymphocyte associated Neighboring gene CD200 molecule

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Atg8-family ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytoplasmic ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-like-conjugating enzyme ATG3
    Names
    ATG3 autophagy related 3 homolog
    NP_001181205.1
    XP_028699118.1
    XP_028699119.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194276.2 → NP_001181205.1  ubiquitin-like-conjugating enzyme ATG3

      See identical proteins and their annotated locations for NP_001181205.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000283
      UniProtKB/TrEMBL
      A0A8J8Y1J2, G7MKB0, H9FYG6
      Related
      ENSMMUP00000071286.1, ENSMMUT00000083931.1
      Conserved Domains (3) summary
      pfam03986
      Location:8 → 135
      Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
      pfam03987
      Location:204 → 265
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain
      pfam10381
      Location:286 → 309
      Autophagy_C; Autophagocytosis associated protein C-terminal

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      163616400..163645270
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028843285.1 → XP_028699118.1  ubiquitin-like-conjugating enzyme ATG3 isoform X1

      Conserved Domains (2) summary
      pfam03986
      Location:8 → 135
      Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
      pfam03987
      Location:204 → 265
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain

    2. XM_028843286.1 → XP_028699119.1  ubiquitin-like-conjugating enzyme ATG3 isoform X2

      UniProtKB/TrEMBL
      F7D7B0
      Related
      ENSMMUP00000018693.3, ENSMMUT00000019973.4
      Conserved Domains (3) summary
      pfam03986
      Location:8 → 121
      Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
      pfam03987
      Location:190 → 251
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain
      pfam10381
      Location:272 → 295
      Autophagy_C; Autophagocytosis associated protein C-terminal
    Nucleotide Protein
    Heading Accession and Version

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