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    RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 706200, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RTF1provided by VGNC
    Official Full Name
    RTF1 homolog, Paf1/RNA polymerase II complex componentprovided by VGNC
    Primary source
    VGNC:VGNC:77119
    See related
    Ensembl:ENSMMUG00000015482
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RTF1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (17876326..17945597)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (17785021..17854865)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene nucleolar and spindle associated protein 1 Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 1 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC106999152 Neighboring gene inositol-trisphosphate 3-kinase A Neighboring gene leukocyte receptor tyrosine kinase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II C-terminal domain phosphoserine binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Cdc73/Paf1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA polymerase-associated protein RTF1 homolog
    Names
    Rtf1, Paf1/RNA polymerase II complex component, homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      17876326..17945597
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001100507.4 → XP_001100507.1  RNA polymerase-associated protein RTF1 homolog

      See identical proteins and their annotated locations for XP_001100507.1

      UniProtKB/TrEMBL
      F6SCU9, G7MWX3
      Related
      ENSMMUP00000020308.3, ENSMMUT00000021709.4
      Conserved Domains (2) summary
      COG5296
      Location:190 → 624
      COG5296; Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
      pfam03126
      Location:360 → 458
      Plus-3; Plus-3 domain
    Nucleotide Protein
    Heading Accession and Version

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