U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CALCOCO2 calcium binding and coiled-coil domain 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 697836, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CALCOCO2provided by VGNC
    Official Full Name
    calcium binding and coiled-coil domain 2provided by VGNC
    Primary source
    VGNC:VGNC:70675
    See related
    Ensembl:ENSMMUG00000012178
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CALCOCO2 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (47936657..47971147, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (40701950..40736295, complement)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene ATP synthase membrane subunit c locus 1 Neighboring gene small nucleolar RNA SNORA68 Neighboring gene 40S ribosomal protein S15a pseudogene Neighboring gene tubulin tyrosine ligase like 6 Neighboring gene homeobox B13

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in positive regulation of autophagosome maturation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in xenophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in PML body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in autophagosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    calcium-binding and coiled-coil domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      47936657..47971147 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015119349.2 → XP_014974835.2  calcium-binding and coiled-coil domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A1D5QCK7, H9EXI3
      Related
      ENSMMUP00000062823.1, ENSMMUT00000109521.1
      Conserved Domains (2) summary
      COG4026
      Location:288 → 346
      COG4026; Uncharacterized protein, contains TOPRIM domain, potential nuclease [General function prediction only]
      pfam07888
      Location:22 → 316
      CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like

    2. XM_028836399.1 → XP_028692232.1  calcium-binding and coiled-coil domain-containing protein 2 isoform X2

      Conserved Domains (1) summary
      pfam07888
      Location:22 → 317
      CALCOCO1; Calcium binding and coiled-coil domain (CALCOCO1) like

    RNA

    1. XR_003723777.1 RNA Sequence

    2. XR_003723778.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.