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    NFXL1 nuclear transcription factor, X-box binding like 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 704785, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NFXL1provided by VGNC
    Official Full Name
    nuclear transcription factor, X-box binding like 1provided by VGNC
    Primary source
    VGNC:VGNC:81485
    See related
    Ensembl:ENSMMUG00000021780
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See NFXL1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (47247003..47314694, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (47857372..47925062, complement)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene corin, serine peptidase Neighboring gene uncharacterized LOC114678292 Neighboring gene uncharacterized LOC106998325 Neighboring gene uncharacterized LOC114678293 Neighboring gene cyclic nucleotide gated channel subunit alpha 1 Neighboring gene NIPA like domain containing 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NF-X1-type zinc finger protein NFXL1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      47247003..47314694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001102529.4 → XP_001102529.1  NF-X1-type zinc finger protein NFXL1

      See identical proteins and their annotated locations for XP_001102529.1

      UniProtKB/TrEMBL
      F7DEJ1, G7MSV2
      Conserved Domains (2) summary
      cd06008
      Location:415 → 463
      NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
      cd16697
      Location:159 → 221
      RING-CH-C4HC3_NFXL1; RING-CH finger, H2 subclass (C4HC3-type), found in nuclear transcription factor, X-box binding-like 1 (NFXL1) and similar proteins

    2. XM_001102704.4 → XP_001102704.1  NF-X1-type zinc finger protein NFXL1

      See identical proteins and their annotated locations for XP_001102704.1

      UniProtKB/TrEMBL
      F7DEJ1, G7MSV2
      Related
      ENSMMUP00000028680.3, ENSMMUT00000030644.4
      Conserved Domains (2) summary
      cd06008
      Location:415 → 463
      NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
      cd16697
      Location:159 → 221
      RING-CH-C4HC3_NFXL1; RING-CH finger, H2 subclass (C4HC3-type), found in nuclear transcription factor, X-box binding-like 1 (NFXL1) and similar proteins

    3. XM_028848432.1 → XP_028704265.1  NF-X1-type zinc finger protein NFXL1

      UniProtKB/TrEMBL
      F7DEJ1, G7MSV2
      Conserved Domains (2) summary
      cd06008
      Location:415 → 463
      NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
      cd16697
      Location:159 → 221
      RING-CH-C4HC3_NFXL1; RING-CH finger, H2 subclass (C4HC3-type), found in nuclear transcription factor, X-box binding-like 1 (NFXL1) and similar proteins

    RNA

    1. XR_003729621.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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