U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC719082 WASH complex subunit 2A [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 719082, updated on 9-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC719082
    Gene description
    WASH complex subunit 2A
    See related
    Ensembl:ENSMMUG00000021539
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    FAM21A
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC719082 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (47032247..47097374)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (41398908..41462888)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene protein FAM25A-like Neighboring gene survival motor neuron protein-like Neighboring gene WASH complex subunit 2-like Neighboring gene protein FAM25A-like Neighboring gene arf-GAP with GTPase, ANK repeat and PH domain-containing protein 5-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables retromer complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein localization to endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of WASH complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    WASH complex subunit 2; WASH complex subunit 2A; WASH complex subunit 2C
    Names
    WASH complex subunit FAM21A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      47032247..47097374
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028826307.1 → XP_028682140.1  WASH complex subunit 2A isoform X1

      UniProtKB/TrEMBL
      A0A1D5RCN9, F7FAX7, H9Z8S6
      Related
      ENSMMUP00000058081.2, ENSMMUT00000060990.2
      Conserved Domains (2) summary
      PTZ00121
      Location:490 → 856
      PTZ00121; MAEBL; Provisional
      pfam15255
      Location:942 → 1078
      CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

    2. XM_028826309.1 → XP_028682142.1  WASH complex subunit 2A isoform X3

      UniProtKB/TrEMBL
      A0A1D5QQK5, H9FSC8
      Related
      ENSMMUP00000050333.2, ENSMMUT00000058035.2
      Conserved Domains (2) summary
      PTZ00121
      Location:490 → 856
      PTZ00121; MAEBL; Provisional
      pfam15255
      Location:934 → 1057
      CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

    3. XM_028826315.1 → XP_028682148.1  WASH complex subunit 2C isoform X9

      UniProtKB/TrEMBL
      H9FSC8
      Conserved Domains (2) summary
      PTZ00121
      Location:490 → 856
      PTZ00121; MAEBL; Provisional
      pfam15255
      Location:936 → 986
      CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

    4. XM_028826312.1 → XP_028682145.1  WASH complex subunit 2A isoform X6

      UniProtKB/TrEMBL
      A0A1D5R9Z3, H9Z8S6
      Related
      ENSMMUP00000057134.2, ENSMMUT00000057391.2
      Conserved Domains (1) summary
      pfam15255
      Location:891 → 1027
      CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

    5. XM_028826313.1 → XP_028682146.1  WASH complex subunit 2A isoform X7

      UniProtKB/TrEMBL
      H9FSC8
      Conserved Domains (1) summary
      pfam15255
      Location:883 → 1006
      CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

    6. XM_028826310.1 → XP_028682143.1  WASH complex subunit 2A isoform X4

      UniProtKB/TrEMBL
      F7FAX3, H9Z8S6
      Related
      ENSMMUP00000028365.4, ENSMMUT00000030312.4
      Conserved Domains (2) summary
      PTZ00121
      Location:466 → 832
      PTZ00121; MAEBL; Provisional
      pfam15255
      Location:918 → 1054
      CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

    7. XM_028826311.1 → XP_028682144.1  WASH complex subunit 2A isoform X5

      UniProtKB/TrEMBL
      H9FSC8
      Conserved Domains (2) summary
      PTZ00121
      Location:466 → 832
      PTZ00121; MAEBL; Provisional
      pfam15255
      Location:910 → 1033
      CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

    8. XM_028826314.1 → XP_028682147.1  WASH complex subunit 2A isoform X8

      UniProtKB/TrEMBL
      H9Z8S6
      Conserved Domains (1) summary
      pfam15255
      Location:867 → 1003
      CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

    9. XM_028826316.1 → XP_028682149.1  WASH complex subunit 2A isoform X10

      UniProtKB/TrEMBL
      H9FSC8
      Conserved Domains (1) summary
      pfam15255
      Location:859 → 982
      CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

    10. XM_028826308.1 → XP_028682141.1  WASH complex subunit 2A isoform X2

      UniProtKB/TrEMBL
      F7E0K6, H9Z8S6
      Related
      ENSMMUP00000035946.3, ENSMMUT00000042934.3
      Conserved Domains (2) summary
      PTZ00121
      Location:474 → 840
      PTZ00121; MAEBL; Provisional
      pfam15255
      Location:926 → 1062
      CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

    11. XM_028826317.1 → XP_028682150.1  WASH complex subunit 2 isoform X11

      Conserved Domains (1) summary
      pfam15255
      Location:314 → 450
      CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.