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    ARID2 AT-rich interaction domain 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 703823, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ARID2provided by VGNC
    Official Full Name
    AT-rich interaction domain 2provided by VGNC
    Primary source
    VGNC:VGNC:69858
    Locus tag
    EGK_03551
    See related
    Ensembl:ENSMMUG00000015962
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ARID2 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (45228356..45417349)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (43856801..44045569)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene lupus La protein pseudogene Neighboring gene 40S ribosomal protein S16 pseudogene Neighboring gene anoctamin 6 Neighboring gene small nucleolar RNA SNORA64/SNORA10 family Neighboring gene lysine-rich nucleolar protein 1 pseudogene Neighboring gene uncharacterized LOC107000840 Neighboring gene SR-related CTD associated factor 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF superfamily-type complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-rich interactive domain-containing protein 2
    Names
    AT rich interactive domain 2 (ARID, RFX-like)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      45228356..45417349
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028829418.1 → XP_028685251.1  AT-rich interactive domain-containing protein 2

      UniProtKB/TrEMBL
      F7DCF7, F7DCH3
      Related
      ENSMMUP00000020998.4, ENSMMUT00000022445.4
      Conserved Domains (4) summary
      pfam09606
      Location:687 → 1103
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam02257
      Location:521 → 601
      RFX_DNA_binding; RFX DNA-binding domain
      pfam03154
      Location:614 → 894
      Atrophin-1; Atrophin-1 family
      cd16866
      Location:15 → 102
      ARID_ARID2; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 2 (ARID2) and similar proteins

    RNA

    1. XR_003720596.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials