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    VPS13C vacuolar protein sorting 13 homolog C [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709080, updated on 17-Aug-2024

    Summary

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    Official Symbol
    VPS13Cprovided by VGNC
    Official Full Name
    vacuolar protein sorting 13 homolog Cprovided by VGNC
    Primary source
    VGNC:VGNC:79399
    See related
    Ensembl:ENSMMUG00000001362
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See VPS13C in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    87
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (38311735..38504471, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (38466789..38656168, complement)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114679423 Neighboring gene uncharacterized LOC106999198 Neighboring gene uncharacterized LOC114679258 Neighboring gene phosphoglycerate kinase 1-like Neighboring gene nucleophosmin-like Neighboring gene C2 calcium dependent domain containing 4A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mitochondrion organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein retention in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein targeting to vacuole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extrinsic component of membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 13C
    Names
    vacuolar protein sorting-associated protein 13C-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      38311735..38504471 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015142394.2 → XP_014997880.2  vacuolar protein sorting-associated protein 13C isoform X3

      UniProtKB/TrEMBL
      F7D6M1, H9FW70
      Related
      ENSMMUP00000001817.4, ENSMMUT00000001926.4
      Conserved Domains (4) summary
      COG5043
      Location:3 → 1399
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      pfam06650
      Location:2722 → 2974
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16909
      Location:3281 → 3458
      VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
      cl02729
      Location:3075 → 3139
      WWE; WWE domain

    2. XM_002808451.3 → XP_002808497.2  vacuolar protein sorting-associated protein 13C isoform X1

      UniProtKB/TrEMBL
      A0A5F8A2A7
      Related
      ENSMMUP00000072031.1, ENSMMUT00000092576.1
      Conserved Domains (4) summary
      COG5043
      Location:3 → 1442
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      pfam06650
      Location:2765 → 3017
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16909
      Location:3324 → 3501
      VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
      cl02729
      Location:3118 → 3182
      WWE; WWE domain

    3. XM_015142393.2 → XP_014997879.2  vacuolar protein sorting-associated protein 13C isoform X2

      UniProtKB/TrEMBL
      H9FW70
      Conserved Domains (4) summary
      COG5043
      Location:3 → 1420
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      pfam06650
      Location:2743 → 2995
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16909
      Location:3302 → 3479
      VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
      cl02729
      Location:3096 → 3160
      WWE; WWE domain

    4. XM_028850997.1 → XP_028706830.1  vacuolar protein sorting-associated protein 13C isoform X5

      UniProtKB/TrEMBL
      H9FW70
      Conserved Domains (5) summary
      COG5043
      Location:2921 → 3399
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      pfam06650
      Location:2501 → 2753
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16909
      Location:3060 → 3237
      VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
      pfam16910
      Location:348 → 569
      VPS13_mid_rpt; Repeating coiled region of VPS13
      cl02729
      Location:2854 → 2918
      WWE; WWE domain

    5. XM_015142395.2 → XP_014997881.2  vacuolar protein sorting-associated protein 13C isoform X4

      UniProtKB/TrEMBL
      H9FW70
      Conserved Domains (5) summary
      COG5043
      Location:2936 → 3414
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      pfam06650
      Location:2516 → 2768
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16909
      Location:3075 → 3252
      VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
      pfam16910
      Location:363 → 584
      VPS13_mid_rpt; Repeating coiled region of VPS13
      cl02729
      Location:2869 → 2933
      WWE; WWE domain

    RNA

    1. XR_001445922.2 RNA Sequence

    2. XR_001445921.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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