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    LDB3 LIM domain binding 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 697140, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LDB3provided by VGNC
    Official Full Name
    LIM domain binding 3provided by VGNC
    Primary source
    VGNC:VGNC:74051
    See related
    Ensembl:ENSMMUG00000003608
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LDB3 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (51290107..51361725, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (45538770..45608336, complement)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein receptor type 1A Neighboring gene U1 spliceosomal RNA Neighboring gene putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 Neighboring gene opsin 4 Neighboring gene 60S ribosomal protein L7a pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables muscle alpha-actinin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in muscle structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Z disc IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of filamentous actin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in stress fiber IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM domain-binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      51290107..51361725 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028826393.1 → XP_028682226.1  LIM domain-binding protein 3 isoform X9

      UniProtKB/TrEMBL
      F6QFS9
      Conserved Domains (6) summary
      cd09362
      Location:555 → 606
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09363
      Location:614 → 667
      LIM3_Enigma_like; The third LIM domain of Enigma-like family
      cd09454
      Location:496 → 547
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      PHA03247
      Location:86 → 494
      PHA03247; large tegument protein UL36; Provisional
      cd00992
      Location:5 → 81
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:193 → 285
      DUF4749; Domain of unknown function (DUF4749)

    2. XM_028826386.1 → XP_028682219.1  LIM domain-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      G7N203
      Conserved Domains (6) summary
      cd09362
      Location:618 → 669
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09363
      Location:677 → 730
      LIM3_Enigma_like; The third LIM domain of Enigma-like family
      cd09454
      Location:559 → 610
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      PHA03247
      Location:361 → 551
      PHA03247; large tegument protein UL36; Provisional
      cd00992
      Location:5 → 81
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:193 → 285
      DUF4749; Domain of unknown function (DUF4749)

    3. XM_028826391.1 → XP_028682224.1  LIM domain-binding protein 3 isoform X6

      UniProtKB/TrEMBL
      F6QFR2
      Conserved Domains (6) summary
      cd09362
      Location:576 → 627
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09363
      Location:635 → 688
      LIM3_Enigma_like; The third LIM domain of Enigma-like family
      cd09454
      Location:517 → 568
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      PHA03247
      Location:319 → 509
      PHA03247; large tegument protein UL36; Provisional
      cd00992
      Location:5 → 81
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:148 → 243
      DUF4749; Domain of unknown function (DUF4749)

    4. XM_015147085.2 → XP_015002571.1  LIM domain-binding protein 3 isoform X9

      UniProtKB/TrEMBL
      F6QFS9
      Related
      ENSMMUP00000004815.4, ENSMMUT00000005111.4
      Conserved Domains (6) summary
      cd09362
      Location:555 → 606
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09363
      Location:614 → 667
      LIM3_Enigma_like; The third LIM domain of Enigma-like family
      cd09454
      Location:496 → 547
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      PHA03247
      Location:86 → 494
      PHA03247; large tegument protein UL36; Provisional
      cd00992
      Location:5 → 81
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:193 → 285
      DUF4749; Domain of unknown function (DUF4749)

    5. XM_015147083.2 → XP_015002569.2  LIM domain-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      G7N203
      Conserved Domains (6) summary
      cd09362
      Location:618 → 669
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09363
      Location:677 → 730
      LIM3_Enigma_like; The third LIM domain of Enigma-like family
      cd09454
      Location:559 → 610
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      PHA03247
      Location:361 → 551
      PHA03247; large tegument protein UL36; Provisional
      cd00992
      Location:5 → 81
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:193 → 285
      DUF4749; Domain of unknown function (DUF4749)

    6. XM_015147086.2 → XP_015002572.1  LIM domain-binding protein 3 isoform X13

      UniProtKB/TrEMBL
      F6QFR2
      Conserved Domains (6) summary
      cd09362
      Location:508 → 559
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09363
      Location:567 → 620
      LIM3_Enigma_like; The third LIM domain of Enigma-like family
      cd09454
      Location:449 → 500
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      cd00992
      Location:5 → 81
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam05687
      Location:272 → 371
      BES1_N; BES1/BZR1 plant transcription factor, N-terminal
      pfam15936
      Location:148 → 242
      DUF4749; Domain of unknown function (DUF4749)

    7. XM_015147084.2 → XP_015002570.2  LIM domain-binding protein 3 isoform X7

      UniProtKB/TrEMBL
      F6QFR2
      Conserved Domains (6) summary
      cd09362
      Location:571 → 622
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09363
      Location:630 → 683
      LIM3_Enigma_like; The third LIM domain of Enigma-like family
      cd09454
      Location:512 → 563
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      PHA03247
      Location:314 → 504
      PHA03247; large tegument protein UL36; Provisional
      cd00992
      Location:5 → 81
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:148 → 238
      DUF4749; Domain of unknown function (DUF4749)

    8. XM_028826390.1 → XP_028682223.1  LIM domain-binding protein 3 isoform X6

      UniProtKB/TrEMBL
      F6QFR2
      Conserved Domains (6) summary
      cd09362
      Location:576 → 627
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09363
      Location:635 → 688
      LIM3_Enigma_like; The third LIM domain of Enigma-like family
      cd09454
      Location:517 → 568
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      PHA03247
      Location:319 → 509
      PHA03247; large tegument protein UL36; Provisional
      cd00992
      Location:5 → 81
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:148 → 243
      DUF4749; Domain of unknown function (DUF4749)

    9. XM_028826395.1 → XP_028682228.1  LIM domain-binding protein 3 isoform X12

      UniProtKB/TrEMBL
      F6QFR2
      Conserved Domains (6) summary
      cd09362
      Location:511 → 562
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09363
      Location:570 → 623
      LIM3_Enigma_like; The third LIM domain of Enigma-like family
      cd09454
      Location:452 → 503
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      smart00228
      Location:39 → 89
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      PHA03247
      Location:254 → 444
      PHA03247; large tegument protein UL36; Provisional
      pfam15936
      Location:97 → 178
      DUF4749; Domain of unknown function (DUF4749)

    10. XM_015147089.2 → XP_015002575.2  LIM domain-binding protein 3 isoform X11

      UniProtKB/TrEMBL
      F6QFR2
      Conserved Domains (6) summary
      cd09362
      Location:516 → 567
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09363
      Location:575 → 628
      LIM3_Enigma_like; The third LIM domain of Enigma-like family
      cd09454
      Location:457 → 508
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      smart00228
      Location:39 → 89
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      PHA03247
      Location:259 → 449
      PHA03247; large tegument protein UL36; Provisional
      pfam15936
      Location:110 → 183
      DUF4749; Domain of unknown function (DUF4749)

    11. XM_028826394.1 → XP_028682227.1  LIM domain-binding protein 3 isoform X10

      UniProtKB/TrEMBL
      F6QFR2
      Related
      ENSMMUP00000004816.4, ENSMMUT00000005112.4
      Conserved Domains (6) summary
      cd09362
      Location:516 → 567
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09363
      Location:575 → 628
      LIM3_Enigma_like; The third LIM domain of Enigma-like family
      cd09454
      Location:457 → 508
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      smart00228
      Location:39 → 89
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      PHA03247
      Location:250 → 449
      PHA03247; large tegument protein UL36; Provisional
      pfam15936
      Location:156 → 246
      DUF4749; Domain of unknown function (DUF4749)

    12. XM_028826389.1 → XP_028682222.1  LIM domain-binding protein 3 isoform X5

      UniProtKB/TrEMBL
      F6QFR2
      Conserved Domains (6) summary
      cd09362
      Location:579 → 630
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09363
      Location:638 → 691
      LIM3_Enigma_like; The third LIM domain of Enigma-like family
      cd09454
      Location:520 → 571
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      smart00228
      Location:39 → 89
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      PHA03247
      Location:322 → 512
      PHA03247; large tegument protein UL36; Provisional
      pfam15936
      Location:156 → 246
      DUF4749; Domain of unknown function (DUF4749)

    13. XM_028826388.1 → XP_028682221.1  LIM domain-binding protein 3 isoform X4

      UniProtKB/TrEMBL
      F6QFR2
      Conserved Domains (6) summary
      cd09362
      Location:584 → 635
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09363
      Location:643 → 696
      LIM3_Enigma_like; The third LIM domain of Enigma-like family
      cd09454
      Location:525 → 576
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      smart00228
      Location:39 → 89
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      PHA03247
      Location:327 → 517
      PHA03247; large tegument protein UL36; Provisional
      pfam15936
      Location:156 → 251
      DUF4749; Domain of unknown function (DUF4749)

    14. XM_028826392.1 → XP_028682225.1  LIM domain-binding protein 3 isoform X8

      UniProtKB/TrEMBL
      F6QFS9
      Conserved Domains (6) summary
      cd09362
      Location:563 → 614
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09363
      Location:622 → 675
      LIM3_Enigma_like; The third LIM domain of Enigma-like family
      cd09454
      Location:504 → 555
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      smart00228
      Location:39 → 89
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      PHA03247
      Location:94 → 502
      PHA03247; large tegument protein UL36; Provisional
      pfam15936
      Location:201 → 293
      DUF4749; Domain of unknown function (DUF4749)

    15. XM_028826385.1 → XP_028682218.1  LIM domain-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      G7N203
      Conserved Domains (6) summary
      cd09362
      Location:626 → 677
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09363
      Location:685 → 738
      LIM3_Enigma_like; The third LIM domain of Enigma-like family
      cd09454
      Location:567 → 618
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      smart00228
      Location:39 → 89
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      PHA03247
      Location:369 → 559
      PHA03247; large tegument protein UL36; Provisional
      pfam15936
      Location:201 → 293
      DUF4749; Domain of unknown function (DUF4749)

    16. XM_028826387.1 → XP_028682220.1  LIM domain-binding protein 3 isoform X3

      UniProtKB/TrEMBL
      G7N203
      Conserved Domains (6) summary
      cd09362
      Location:607 → 658
      LIM2_Enigma_like; The second LIM domain of Enigma-like family
      cd09363
      Location:666 → 719
      LIM3_Enigma_like; The third LIM domain of Enigma-like family
      cd09454
      Location:548 → 599
      LIM1_ZASP_Cypher; The first LIM domain of ZASP/Cypher family
      PHA03247
      Location:350 → 540
      PHA03247; large tegument protein UL36; Provisional
      cd00992
      Location:9 → 70
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:182 → 274
      DUF4749; Domain of unknown function (DUF4749)

    17. XM_028826396.1 → XP_028682229.1  LIM domain-binding protein 3 isoform X14

      Conserved Domains (3) summary
      smart00228
      Location:39 → 89
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      PHA03247
      Location:369 → 549
      PHA03247; large tegument protein UL36; Provisional
      pfam15936
      Location:201 → 293
      DUF4749; Domain of unknown function (DUF4749)

    18. XM_028826397.1 → XP_028682230.1  LIM domain-binding protein 3 isoform X15

      UniProtKB/TrEMBL
      F6QFV3, H9EUW3
      Related
      ENSMMUP00000004814.3, ENSMMUT00000005110.4
      Conserved Domains (3) summary
      PRK07764
      Location:92 → 164
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      cd00992
      Location:5 → 81
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:193 → 285
      DUF4749; Domain of unknown function (DUF4749)

    19. XM_015147090.2 → XP_015002576.1  LIM domain-binding protein 3 isoform X15

      UniProtKB/TrEMBL
      F6QFV3, H9EUW3
      Conserved Domains (3) summary
      PRK07764
      Location:92 → 164
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      cd00992
      Location:5 → 81
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:193 → 285
      DUF4749; Domain of unknown function (DUF4749)

    20. XM_015147091.2 → XP_015002577.1  LIM domain-binding protein 3 isoform X16

      Conserved Domains (2) summary
      cd00992
      Location:5 → 81
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam15936
      Location:148 → 242
      DUF4749; Domain of unknown function (DUF4749)
    Nucleotide Protein
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