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    JMJD4 jumonji domain containing 4 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696580, updated on 17-Aug-2024

    Summary

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    Official Symbol
    JMJD4provided by VGNC
    Official Full Name
    jumonji domain containing 4provided by VGNC
    Primary source
    VGNC:VGNC:106393
    See related
    Ensembl:ENSMMUG00000053969
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See JMJD4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (85330782..85335154, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (138751953..138756291, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor macMulV1R-ps1001 pseudogene Neighboring gene uncharacterized LOC114669944 Neighboring gene synaptosome associated protein 47 Neighboring gene uncharacterized LOC114669947 Neighboring gene serine protease 38

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H4R3 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of translational termination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    jmjC domain-containing protein 4; 2-oxoglutarate and iron-dependent oxygenase JMJD4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      85330782..85335154 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001086458.4 → XP_001086458.2  2-oxoglutarate and iron-dependent oxygenase JMJD4 isoform X3

      Conserved Domains (1) summary
      cl21464
      Location:87 → 334
      cupin_like; Conserved domain found in cupin and related proteins

    2. XM_001086580.4 → XP_001086580.1  2-oxoglutarate and iron-dependent oxygenase JMJD4 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZDY1
      Related
      ENSMMUP00000063385.1, ENSMMUT00000084435.1
      Conserved Domains (1) summary
      cl21464
      Location:87 → 334
      cupin_like; Conserved domain found in cupin and related proteins

    3. XM_028826330.1 → XP_028682163.1  2-oxoglutarate and iron-dependent oxygenase JMJD4 isoform X1

      Conserved Domains (1) summary
      cl21464
      Location:88 → 330
      cupin_like; Conserved domain found in cupin and related proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials