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    TBX3 T-box transcription factor 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 713740, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TBX3provided by VGNC
    Official Full Name
    T-box transcription factor 3provided by VGNC
    Primary source
    VGNC:VGNC:78273
    Locus tag
    EGK_04228
    See related
    Ensembl:ENSMMUG00000015070
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TBX3 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (114389233..114403536, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (114711826..114726167, complement)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114670960 Neighboring gene osteoclast-stimulating factor 1-like Neighboring gene small nucleolar RNA SNORA27 Neighboring gene uncharacterized LOC107001030

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cardiac chamber development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in central nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart looping IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell population proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-box transcription factor TBX3
    Names
    T-box 3 (ulnar mammary syndrome)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      114389233..114403536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001111920.3 → XP_001111920.1  T-box transcription factor TBX3 isoform X1

      See identical proteins and their annotated locations for XP_001111920.1

      UniProtKB/TrEMBL
      A0A5F8API3, A0A8J8Y5K9, G7N5Q8
      Related
      ENSMMUP00000079291.1, ENSMMUT00000096569.1
      Conserved Domains (2) summary
      pfam00907
      Location:105 → 305
      T-box; T-box
      pfam12598
      Location:323 → 403
      TBX; T-box transcription factor

    2. XM_001111958.3 → XP_001111958.1  T-box transcription factor TBX3 isoform X2

      See identical proteins and their annotated locations for XP_001111958.1

      UniProtKB/TrEMBL
      F6WW74
      Related
      ENSMMUP00000019748.4, ENSMMUT00000021121.4
      Conserved Domains (2) summary
      pfam00907
      Location:105 → 285
      T-box; T-box
      pfam12598
      Location:303 → 383
      TBX; T-box transcription factor
    Nucleotide Protein
    Heading Accession and Version

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