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    HDDC2 HD domain containing 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 716491, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HDDC2provided by VGNC
    Official Full Name
    HD domain containing 2provided by VGNC
    Primary source
    VGNC:VGNC:73209
    Locus tag
    EGK_15379
    See related
    Ensembl:ENSMMUG00000015317
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See HDDC2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (28801028..28850337, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (142341173..142369300)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 217 Neighboring gene uncharacterized LOC114677481 Neighboring gene TPD52 like 1 Neighboring gene uncharacterized LOC114677482 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene hes related family bHLH transcription factor with YRPW motif 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5'-deoxynucleotidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    5'-deoxynucleotidase HDDC2; HD domain-containing protein 2
    NP_001181801.1
    XP_002803953.1
    XP_028702673.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194872.3 → NP_001181801.1  5'-deoxynucleotidase HDDC2

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000336
      UniProtKB/TrEMBL
      F6Q5W6
      Related
      ENSMMUP00000020085.3, ENSMMUT00000021475.4
      Conserved Domains (1) summary
      cl21469
      Location:24 → 149
      HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      28801028..28850337 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028846840.1 → XP_028702673.1  HD domain-containing protein 2 isoform X2

      Conserved Domains (1) summary
      pfam13023
      Location:5 → 156
      HD_3; HD domain

    2. XM_002803907.2 → XP_002803953.1  HD domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_002803953.1

      UniProtKB/TrEMBL
      A0A8J8YN83, G7MQF9, H9Z9I8
      Conserved Domains (1) summary
      pfam13023
      Location:24 → 180
      HD_3; HD domain
    Nucleotide Protein
    Heading Accession and Version

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