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    TRIM13 tripartite motif containing 13 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 707239, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TRIM13provided by VGNC
    Official Full Name
    tripartite motif containing 13provided by VGNC
    Primary source
    VGNC:VGNC:79972
    See related
    Ensembl:ENSMMUG00000010898
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM13 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 17 NC_041770.1 (28390630..28466389)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 17 NC_027909.1 (29287257..29363119)

    Chromosome 17 - NC_041770.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114673549 Neighboring gene cTAGE family member 2-like Neighboring gene SPRY domain containing 7 Neighboring gene uncharacterized LOC114673551 Neighboring gene microRNA mir-7194 Neighboring gene potassium channel regulator Neighboring gene microRNA mir-16-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of NF-kappaB transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041770.1 Reference Mmul_10 Primary Assembly

      Range
      28390630..28466389
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015121093.2 → XP_014976579.2  E3 ubiquitin-protein ligase TRIM13

      UniProtKB/TrEMBL
      F7FSH5, F7FSI3
      Related
      ENSMMUP00000014297.3, ENSMMUT00000015255.4
      Conserved Domains (3) summary
      smart00336
      Location:90 → 131
      BBOX; B-Box-type zinc finger
      pfam12252
      Location:163 → 234
      SidE; Dot/Icm substrate protein
      cd16762
      Location:5 → 61
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

    2. XM_002800768.3 → XP_002800814.2  E3 ubiquitin-protein ligase TRIM13

      UniProtKB/TrEMBL
      F7FSH5, F7FSI3
      Related
      ENSMMUP00000014298.3, ENSMMUT00000015256.4
      Conserved Domains (3) summary
      smart00336
      Location:90 → 131
      BBOX; B-Box-type zinc finger
      pfam12252
      Location:163 → 234
      SidE; Dot/Icm substrate protein
      cd16762
      Location:5 → 61
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

    3. XM_015121091.2 → XP_014976577.2  E3 ubiquitin-protein ligase TRIM13

      UniProtKB/TrEMBL
      F7FSH5, F7FSI3
      Conserved Domains (3) summary
      smart00336
      Location:90 → 131
      BBOX; B-Box-type zinc finger
      pfam12252
      Location:163 → 234
      SidE; Dot/Icm substrate protein
      cd16762
      Location:5 → 61
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

    4. XM_015121092.2 → XP_014976578.2  E3 ubiquitin-protein ligase TRIM13

      UniProtKB/TrEMBL
      F7FSH5, F7FSI3
      Related
      ENSMMUP00000067819.1, ENSMMUT00000093966.1
      Conserved Domains (3) summary
      smart00336
      Location:90 → 131
      BBOX; B-Box-type zinc finger
      pfam12252
      Location:163 → 234
      SidE; Dot/Icm substrate protein
      cd16762
      Location:5 → 61
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

    5. XM_028837505.1 → XP_028693338.1  E3 ubiquitin-protein ligase TRIM13

      UniProtKB/TrEMBL
      F7FSH5, F7FSI3
      Conserved Domains (3) summary
      smart00336
      Location:90 → 131
      BBOX; B-Box-type zinc finger
      pfam12252
      Location:163 → 234
      SidE; Dot/Icm substrate protein
      cd16762
      Location:5 → 61
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins

    6. XM_028837507.1 → XP_028693340.1  E3 ubiquitin-protein ligase TRIM13

      UniProtKB/TrEMBL
      F7FSH5, F7FSI3
      Conserved Domains (3) summary
      smart00336
      Location:90 → 131
      BBOX; B-Box-type zinc finger
      pfam12252
      Location:163 → 234
      SidE; Dot/Icm substrate protein
      cd16762
      Location:5 → 61
      RING-HC_TRIM13_C-V; RING finger, HC subclass, found in tripartite motif-containing protein 13 (TRIM13) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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