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    PAAF1 proteasomal ATPase associated factor 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718755, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PAAF1provided by VGNC
    Official Full Name
    proteasomal ATPase associated factor 1provided by VGNC
    Primary source
    VGNC:VGNC:101372
    Locus tag
    EGK_06665
    See related
    Ensembl:ENSMMUG00000007382
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human all
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    Genomic context

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    See PAAF1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (66930158..66983035)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (65901155..65953983)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L48 Neighboring gene coiled-coil domain-containing protein 58 pseudogene Neighboring gene cytochrome c oxidase assembly factor 4 homolog Neighboring gene actin-related protein 2/3 complex subunit 3 Neighboring gene DnaJ heat shock protein family (Hsp40) member B13 Neighboring gene uncoupling protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase II promoter IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteasomal ATPase-associated factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001265839.1 → NP_001252768.1  proteasomal ATPase-associated factor 1

      See identical proteins and their annotated locations for NP_001252768.1

      Status: PROVISIONAL

      Source sequence(s)
      JU473233
      UniProtKB/TrEMBL
      A0A1D5R569, A0A5F8A925, A0A8J8YCY4, G7NEA7
      Related
      ENSMMUP00000073424.1, ENSMMUT00000092018.1
      Conserved Domains (3) summary
      COG2319
      Location:57 → 392
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:138 → 174
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:89 → 338
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      66930158..66983035
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028832860.1 → XP_028688693.1  proteasomal ATPase-associated factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5R569, A0A5F8ABW5
      Related
      ENSMMUP00000074877.1, ENSMMUT00000098198.1
      Conserved Domains (2) summary
      sd00039
      Location:138 → 174
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:89 → 342
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_028832861.1 → XP_028688694.1  proteasomal ATPase-associated factor 1 isoform X3

      UniProtKB/TrEMBL
      F7A0V2
      Related
      ENSMMUP00000036839.3, ENSMMUT00000043851.3
      Conserved Domains (2) summary
      sd00039
      Location:96 → 132
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:89 → 281
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    3. XM_015115138.2 → XP_014970624.1  proteasomal ATPase-associated factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A1D5R569
      Related
      ENSMMUP00000009685.3, ENSMMUT00000010323.4
      Conserved Domains (2) summary
      sd00039
      Location:89 → 125
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:40 → 289
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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