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    ATG13 autophagy related 13 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714322, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ATG13provided by VGNC
    Official Full Name
    autophagy related 13provided by VGNC
    Primary source
    VGNC:VGNC:70148
    Locus tag
    EGK_06308
    See related
    Ensembl:ENSMMUG00000019672
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ATG13 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (19089783..19148472, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (19363691..19423197, complement)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114672266 Neighboring gene zinc finger protein 408 Neighboring gene Rho GTPase activating protein 1 Neighboring gene harbinger transposase derived 1 Neighboring gene autophagy and beclin 1 regulator 1 Neighboring gene cholinergic receptor muscarinic 4 Neighboring gene midkine

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in piecemeal microautophagy of the nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to phagophore assembly site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Atg1/ULK1 kinase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extrinsic component of membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in phagophore assembly site IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    autophagy-related protein 13
    Names
    ATG13 autophagy related 13 homolog
    Autophagy-related protein 13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      19089783..19148472 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001111885.4 → XP_001111885.1  autophagy-related protein 13 isoform X4

      See identical proteins and their annotated locations for XP_001111885.1

      UniProtKB/TrEMBL
      A0A5F7ZJX6, A0A5F7ZRN0, A0A8J8Y0J9, G7NDH0
      Related
      ENSMMUP00000065482.1, ENSMMUT00000108627.1
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    2. XM_001111856.4 → XP_001111856.1  autophagy-related protein 13 isoform X1

      See identical proteins and their annotated locations for XP_001111856.1

      UniProtKB/TrEMBL
      A0A5F7ZJ87, A0A5F7ZRN0
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    3. XM_028833475.1 → XP_028689308.1  autophagy-related protein 13 isoform X9

      UniProtKB/TrEMBL
      A0A5F7Z802, A0A5F8AKT1
      Related
      ENSMMUP00000078524.1, ENSMMUT00000086484.1
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    4. XM_001111708.4 → XP_001111708.1  autophagy-related protein 13 isoform X8

      See identical proteins and their annotated locations for XP_001111708.1

      UniProtKB/TrEMBL
      A0A5F7Z802, F6T0F9, F6T0G8, F7CMI5
      Related
      ENSMMUP00000037124.1, ENSMMUT00000044118.3
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    5. XM_028833473.1 → XP_028689306.1  autophagy-related protein 13 isoform X6

      UniProtKB/TrEMBL
      A0A5F7ZRN0
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 195
      ATG13; Autophagy-related protein 13

    6. XM_028833474.1 → XP_028689307.1  autophagy-related protein 13 isoform X7

      UniProtKB/TrEMBL
      A0A5F7ZRN0
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    7. XM_002799565.3 → XP_002799611.1  autophagy-related protein 13 isoform X4

      See identical proteins and their annotated locations for XP_002799611.1

      UniProtKB/TrEMBL
      A0A5F7ZJX6, A0A5F7ZRN0, A0A8J8Y0J9, G7NDH0
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    8. XM_028833471.1 → XP_028689304.1  autophagy-related protein 13 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZRN0
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    9. XM_028833472.1 → XP_028689305.1  autophagy-related protein 13 isoform X5

      UniProtKB/TrEMBL
      A0A5F7ZRN0
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 195
      ATG13; Autophagy-related protein 13

    10. XM_015114373.2 → XP_014969859.1  autophagy-related protein 13 isoform X3

      UniProtKB/TrEMBL
      A0A5F7ZRN0
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    11. XM_015114363.2 → XP_014969849.1  autophagy-related protein 13 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZJ87, A0A5F7ZRN0
      Related
      ENSMMUP00000065241.1, ENSMMUT00000081604.1
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    12. XM_015114364.2 → XP_014969850.1  autophagy-related protein 13 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZJ87, A0A5F7ZRN0
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    13. XM_015114366.2 → XP_014969852.1  autophagy-related protein 13 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZJ87, A0A5F7ZRN0
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    14. XM_015114365.2 → XP_014969851.1  autophagy-related protein 13 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZJ87, A0A5F7ZRN0
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13

    15. XM_015114367.2 → XP_014969853.1  autophagy-related protein 13 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZJ87, A0A5F7ZRN0
      Conserved Domains (1) summary
      pfam10033
      Location:19 → 192
      ATG13; Autophagy-related protein 13
    Nucleotide Protein
    Heading Accession and Version

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