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    PLOD2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 715820, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PLOD2provided by VGNC
    Official Full Name
    procollagen-lysine,2-oxoglutarate 5-dioxygenase 2provided by VGNC
    Primary source
    VGNC:VGNC:76176
    See related
    Ensembl:ENSMMUG00000011577
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See PLOD2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (48230069..48322438, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (155574254..155665943)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114676131 Neighboring gene ganglioside GM2 activator pseudogene Neighboring gene uncharacterized LOC114676269 Neighboring gene phospholipid scramblase 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables procollagen-lysine 5-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-lysine hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    procollagen-lysine,2-oxoglutarate 5-dioxygenase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      48230069..48322438 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015131980.2 → XP_014987466.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X2

      UniProtKB/TrEMBL
      H9FVX6
      Related
      ENSMMUP00000015203.4, ENSMMUT00000016221.4
      Conserved Domains (1) summary
      smart00702
      Location:572 → 735
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

    2. XM_015131979.2 → XP_014987465.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1

      UniProtKB/TrEMBL
      H9FVX5
      Related
      ENSMMUP00000061726.1, ENSMMUT00000110244.1
      Conserved Domains (1) summary
      smart00702
      Location:593 → 756
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

    3. XM_015131982.2 → XP_014987468.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X4

      UniProtKB/TrEMBL
      G7MJK6
      Conserved Domains (1) summary
      smart00702
      Location:538 → 701
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

    4. XM_015131981.2 → XP_014987467.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X3

      UniProtKB/TrEMBL
      F6WSU7, G7MJK6
      Related
      ENSMMUP00000038562.3, ENSMMUT00000045528.3
      Conserved Domains (1) summary
      smart00702
      Location:540 → 703
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    Nucleotide Protein
    Heading Accession and Version

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