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    SS18 SS18 subunit of BAF chromatin remodeling complex [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709897, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SS18provided by VGNC
    Official Full Name
    SS18 subunit of BAF chromatin remodeling complexprovided by VGNC
    Primary source
    VGNC:VGNC:77896
    See related
    Ensembl:ENSMMUG00000018059
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SS18 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 18 NC_041771.1 (56341712..56413983)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 18 NC_027910.1 (14514359..14586636, complement)

    Chromosome 18 - NC_041771.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene TATA-box binding protein associated factor 4b Neighboring gene proteasome 20S subunit alpha 8 Neighboring gene uncharacterized LOC106994452 Neighboring gene uncharacterized LOC114673736

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SSXT
    Names
    SS18, nBAF chromatin remodeling complex subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257494.1 → NP_001244423.1  protein SSXT

      See identical proteins and their annotated locations for NP_001244423.1

      Status: PROVISIONAL

      Source sequence(s)
      JU321874
      UniProtKB/TrEMBL
      F7EQE4, G7NKI1, H9ETC1
      Related
      ENSMMUP00000023735.2, ENSMMUT00000025371.3
      Conserved Domains (1) summary
      pfam05030
      Location:14 → 73
      SSXT; SSXT protein (N-terminal region)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041771.1 Reference Mmul_10 Primary Assembly

      Range
      56341712..56413983
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015121706.2 → XP_014977192.1  protein SSXT isoform X2

      UniProtKB/TrEMBL
      G7NKI1
      Conserved Domains (2) summary
      pfam11593
      Location:46 → 194
      Med3; Mediator complex subunit 3 fungal
      pfam05030
      Location:1 → 50
      SSXT; SSXT protein (N-terminal region)

    2. XM_028837773.1 → XP_028693606.1  protein SSXT isoform X2

      UniProtKB/TrEMBL
      G7NKI1
      Conserved Domains (2) summary
      pfam11593
      Location:46 → 194
      Med3; Mediator complex subunit 3 fungal
      pfam05030
      Location:1 → 50
      SSXT; SSXT protein (N-terminal region)

    3. XM_015121705.2 → XP_014977191.1  protein SSXT isoform X1

      UniProtKB/TrEMBL
      A0A1D5R9F8, G7NKI1
      Related
      ENSMMUP00000056949.1, ENSMMUT00000068064.2
      Conserved Domains (1) summary
      pfam05030
      Location:14 → 73
      SSXT; SSXT protein (N-terminal region)

    4. XM_028837772.1 → XP_028693605.1  protein SSXT isoform X2

      UniProtKB/TrEMBL
      G7NKI1
      Conserved Domains (2) summary
      pfam11593
      Location:46 → 194
      Med3; Mediator complex subunit 3 fungal
      pfam05030
      Location:1 → 50
      SSXT; SSXT protein (N-terminal region)

    5. XM_028837775.1 → XP_028693608.1  protein SSXT isoform X3

      Conserved Domains (1) summary
      pfam11593
      Location:6 → 135
      Med3; Mediator complex subunit 3 fungal
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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