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    SLTM SAFB like transcription modulator [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 701841, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLTMprovided by VGNC
    Official Full Name
    SAFB like transcription modulatorprovided by VGNC
    Primary source
    VGNC:VGNC:77748
    See related
    Ensembl:ENSMMUG00000022200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SLTM in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (35292921..35349484, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (35438632..35494339, complement)

    Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene MINDY lysine 48 deubiquitinase 2 Neighboring gene uncharacterized LOC114679421 Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene ring finger protein 111 Neighboring gene cyclin B2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SAFB-like transcription modulator

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041760.1 Reference Mmul_10 Primary Assembly

      Range
      35292921..35349484 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015142379.2 → XP_014997865.1  SAFB-like transcription modulator isoform X7

      UniProtKB/TrEMBL
      A0A1D5QIK3
      Conserved Domains (5) summary
      smart00513
      Location:22 → 56
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      PTZ00121
      Location:119 → 623
      PTZ00121; MAEBL; Provisional
      COG0724
      Location:189 → 396
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      PRK12678
      Location:699 → 888
      PRK12678; transcription termination factor Rho; Provisional
      cl17169
      Location:285 → 358
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_015142375.2 → XP_014997861.1  SAFB-like transcription modulator isoform X2

      UniProtKB/TrEMBL
      A0A1D5QIK3, H9FZW9
      Conserved Domains (6) summary
      smart00513
      Location:22 → 56
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      PTZ00121
      Location:145 → 729
      PTZ00121; MAEBL; Provisional
      PLN03124
      Location:25 → 168
      PLN03124; poly [ADP-ribose] polymerase; Provisional
      PHA03307
      Location:778 → 1013
      PHA03307; transcriptional regulator ICP4; Provisional
      COG0724
      Location:271 → 478
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl17169
      Location:367 → 440
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_015142374.2 → XP_014997860.1  SAFB-like transcription modulator isoform X1

      UniProtKB/TrEMBL
      A0A1D5QIK3, H9FZX0
      Related
      ENSMMUP00000042947.1, ENSMMUT00000069333.2
      Conserved Domains (5) summary
      smart00513
      Location:22 → 56
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      PTZ00121
      Location:34 → 723
      PTZ00121; MAEBL; Provisional
      PHA03307
      Location:796 → 1031
      PHA03307; transcriptional regulator ICP4; Provisional
      COG0724
      Location:289 → 496
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl17169
      Location:385 → 458
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. XM_015142376.2 → XP_014997862.1  SAFB-like transcription modulator isoform X3

      UniProtKB/TrEMBL
      A0A1D5QIK3, A0A5F8AGP7
      Related
      ENSMMUP00000076121.1, ENSMMUT00000107123.1
      Conserved Domains (4) summary
      smart00513
      Location:22 → 56
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      PTZ00121
      Location:38 → 723
      PTZ00121; MAEBL; Provisional
      COG0724
      Location:289 → 496
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl17169
      Location:385 → 458
      RRM_SF; RNA recognition motif (RRM) superfamily

    5. XM_015142377.2 → XP_014997863.1  SAFB-like transcription modulator isoform X5

      UniProtKB/TrEMBL
      A0A1D5QIK3
      Related
      ENSMMUP00000029224.4, ENSMMUT00000031225.4
      Conserved Domains (6) summary
      smart00513
      Location:22 → 56
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      PTZ00121
      Location:133 → 641
      PTZ00121; MAEBL; Provisional
      PLN03124
      Location:25 → 174
      PLN03124; poly [ADP-ribose] polymerase; Provisional
      COG0724
      Location:207 → 414
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      PRK12678
      Location:717 → 906
      PRK12678; transcription termination factor Rho; Provisional
      cl17169
      Location:303 → 376
      RRM_SF; RNA recognition motif (RRM) superfamily

    6. XM_015142378.2 → XP_014997864.1  SAFB-like transcription modulator isoform X6

      UniProtKB/TrEMBL
      A0A1D5QIK3
      Conserved Domains (5) summary
      smart00513
      Location:22 → 56
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      PTZ00121
      Location:135 → 639
      PTZ00121; MAEBL; Provisional
      COG0724
      Location:205 → 412
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      PRK12678
      Location:715 → 904
      PRK12678; transcription termination factor Rho; Provisional
      cl17169
      Location:301 → 374
      RRM_SF; RNA recognition motif (RRM) superfamily

    7. XM_002804792.3 → XP_002804838.2  SAFB-like transcription modulator isoform X4

      UniProtKB/TrEMBL
      A0A1D5QIK3
      Conserved Domains (6) summary
      smart00513
      Location:22 → 56
      SAP; Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation
      PTZ00121
      Location:149 → 657
      PTZ00121; MAEBL; Provisional
      PLN03124
      Location:25 → 190
      PLN03124; poly [ADP-ribose] polymerase; Provisional
      COG0724
      Location:223 → 430
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      PRK12678
      Location:733 → 922
      PRK12678; transcription termination factor Rho; Provisional
      cl17169
      Location:319 → 392
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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