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    SDR42E1 short chain dehydrogenase/reductase family 42E, member 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 714229, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SDR42E1provided by VGNC
    Official Full Name
    short chain dehydrogenase/reductase family 42E, member 1provided by VGNC
    Primary source
    VGNC:VGNC:77342
    See related
    Ensembl:ENSMMUG00000020372
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SDR42E1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (69015645..69032817, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (66694778..66713195, complement)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene c-Maf inducing protein Neighboring gene uncharacterized LOC114674355 Neighboring gene phospholipase C gamma 2 Neighboring gene hydroxysteroid 17-beta dehydrogenase 2 Neighboring gene M-phase phosphoprotein 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3-beta-hydroxy-delta5-steroid dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in steroid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    short-chain dehydrogenase/reductase family 42E member 1
    NP_001181456.1
    XP_014982156.1
    XP_014982157.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194527.3 → NP_001181456.1  short-chain dehydrogenase/reductase family 42E member 1

      See identical proteins and their annotated locations for NP_001181456.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000291
      UniProtKB/TrEMBL
      F6UMT9, G7NPD7, H9EX14
      Related
      ENSMMUP00000080248.1, ENSMMUT00000110053.1
      Conserved Domains (1) summary
      cd09812
      Location:10 → 350
      3b-HSD_like_1_SDR_e; 3beta-hydroxysteroid dehydrogenase (3b-HSD)-like, subgroup1, extended (e) SDRs

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      69015645..69032817 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015126671.2 → XP_014982157.1  short-chain dehydrogenase/reductase family 42E member 1 isoform X1

      UniProtKB/TrEMBL
      F6UMT9, G7NPD7, H9EX14
      Related
      ENSMMUP00000072588.1, ENSMMUT00000103134.1
      Conserved Domains (1) summary
      cd09812
      Location:10 → 350
      3b-HSD_like_1_SDR_e; 3beta-hydroxysteroid dehydrogenase (3b-HSD)-like, subgroup1, extended (e) SDRs

    2. XM_015126670.2 → XP_014982156.1  short-chain dehydrogenase/reductase family 42E member 1 isoform X1

      UniProtKB/TrEMBL
      F6UMT9, G7NPD7, H9EX14
      Related
      ENSMMUP00000026808.3, ENSMMUT00000028652.4
      Conserved Domains (1) summary
      cd09812
      Location:10 → 350
      3b-HSD_like_1_SDR_e; 3beta-hydroxysteroid dehydrogenase (3b-HSD)-like, subgroup1, extended (e) SDRs
    Nucleotide Protein
    Heading Accession and Version

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