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    FOCAD focadhesin [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 711490, updated on 17-Aug-2024

    Summary

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    Official Symbol
    FOCADprovided by VGNC
    Official Full Name
    focadhesinprovided by VGNC
    Primary source
    VGNC:VGNC:72556
    See related
    Ensembl:ENSMMUG00000019070
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See FOCAD in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    45
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (62661550..62977913, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (62947322..63262375, complement)

    Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114672783 Neighboring gene interferon beta 1 Neighboring gene 3-hydroxyacyl-CoA dehydratase 4 Neighboring gene small nucleolar RNA SNORA30/SNORA37 family Neighboring gene 28S ribosomal protein S36, mitochondrial pseudogene Neighboring gene microRNA mir-491 Neighboring gene MLLT3 super elongation complex subunit Neighboring gene U4 spliceosomal RNA Neighboring gene survival motor neuron protein-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    focadhesin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041768.1 Reference Mmul_10 Primary Assembly

      Range
      62661550..62977913 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028835130.1 → XP_028690963.1  focadhesin isoform X1

      UniProtKB/TrEMBL
      G7NFX3, H9EW03
      Conserved Domains (2) summary
      pfam11229
      Location:1226 → 1814
      Focadhesin
      pfam12530
      Location:503 → 727
      DUF3730; Protein of unknown function (DUF3730)

    2. XM_028835128.1 → XP_028690961.1  focadhesin isoform X1

      UniProtKB/TrEMBL
      G7NFX3, H9EW03
      Conserved Domains (2) summary
      pfam11229
      Location:1226 → 1814
      Focadhesin
      pfam12530
      Location:503 → 727
      DUF3730; Protein of unknown function (DUF3730)

    3. XM_028835129.1 → XP_028690962.1  focadhesin isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZH80, G7NFX3, H9EW03
      Related
      ENSMMUP00000063989.1, ENSMMUT00000109290.1
      Conserved Domains (2) summary
      pfam11229
      Location:1213 → 1801
      Focadhesin
      pfam12530
      Location:490 → 714
      DUF3730; Protein of unknown function (DUF3730)
    Nucleotide Protein
    Heading Accession and Version

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