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    CHD7 chromodomain helicase DNA binding protein 7 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 706471, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CHD7provided by VGNC
    Official Full Name
    chromodomain helicase DNA binding protein 7provided by VGNC
    Primary source
    VGNC:VGNC:71065
    See related
    Ensembl:ENSMMUG00000011584
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CHD7 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (61285478..61473857)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (58701054..58889212)

    Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC699263 Neighboring gene ubiquinol-cytochrome-c reductase complex assembly factor 2 pseudogene Neighboring gene RAB2A, member RAS oncogene family Neighboring gene uncharacterized LOC106999781 Neighboring gene interferon-induced transmembrane protein 3 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 7
    XP_015000905.1
    XP_015000906.1
    XP_015000908.1
    XP_015000909.1
    XP_015000910.1
    XP_028708525.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041761.1 Reference Mmul_10 Primary Assembly

      Range
      61285478..61473857
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015145419.2 → XP_015000905.1  chromodomain-helicase-DNA-binding protein 7 isoform X1

      UniProtKB/TrEMBL
      F6PP91, G7MZF4, H9FWW8
      Related
      ENSMMUP00000015218.3, ENSMMUT00000016237.4
      Conserved Domains (6) summary
      smart00592
      Location:2642 → 2686
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:967 → 1566
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      pfam09606
      Location:179 → 576
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam07533
      Location:2564 → 2604
      BRK; BRK domain
      cd18663
      Location:879 → 936
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:796 → 861
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

    2. XM_015145423.2 → XP_015000909.1  chromodomain-helicase-DNA-binding protein 7 isoform X3

      UniProtKB/TrEMBL
      G7MZF4
      Conserved Domains (9) summary
      smart00592
      Location:2631 → 2675
      BRK; domain in transcription and CHROMO domain helicases
      cd00024
      Location:801 → 862
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      cd00046
      Location:987 → 1136
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam08430
      Location:306 → 423
      Forkhead_N; Forkhead N-terminal region
      pfam09606
      Location:202 → 576
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam00176
      Location:971 → 1258
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:1290 → 1404
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:883 → 935
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam07533
      Location:2564 → 2604
      BRK; BRK domain

    3. XM_015145422.2 → XP_015000908.1  chromodomain-helicase-DNA-binding protein 7 isoform X2

      UniProtKB/TrEMBL
      G7MZF4
      Conserved Domains (9) summary
      smart00592
      Location:2641 → 2685
      BRK; domain in transcription and CHROMO domain helicases
      cd00024
      Location:801 → 862
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      cd00046
      Location:987 → 1136
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam08430
      Location:306 → 423
      Forkhead_N; Forkhead N-terminal region
      pfam09606
      Location:202 → 576
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam00176
      Location:971 → 1258
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:1290 → 1404
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:883 → 935
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam07533
      Location:2563 → 2603
      BRK; BRK domain

    4. XM_015145420.2 → XP_015000906.1  chromodomain-helicase-DNA-binding protein 7 isoform X1

      UniProtKB/TrEMBL
      F6PP91, G7MZF4, H9FWW8
      Conserved Domains (6) summary
      smart00592
      Location:2642 → 2686
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:967 → 1566
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      pfam09606
      Location:179 → 576
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam07533
      Location:2564 → 2604
      BRK; BRK domain
      cd18663
      Location:879 → 936
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:796 → 861
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

    5. XM_028852692.1 → XP_028708525.1  chromodomain-helicase-DNA-binding protein 7 isoform X1

      UniProtKB/TrEMBL
      F6PP91, G7MZF4, H9FWW8
      Conserved Domains (6) summary
      smart00592
      Location:2642 → 2686
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:967 → 1566
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      pfam09606
      Location:179 → 576
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      pfam07533
      Location:2564 → 2604
      BRK; BRK domain
      cd18663
      Location:879 → 936
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:796 → 861
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

    6. XM_015145424.2 → XP_015000910.1  chromodomain-helicase-DNA-binding protein 7 isoform X4

      Conserved Domains (6) summary
      smart00592
      Location:1821 → 1865
      BRK; domain in transcription and CHROMO domain helicases
      PLN03142
      Location:146 → 745
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:58 → 115
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      pfam07533
      Location:1743 → 1785
      BRK; BRK domain
      cl28899
      Location:147 → 368
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
      cl28914
      Location:13 → 40
      CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains
    Nucleotide Protein
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