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    YBX3 Y-box binding protein 3 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 722347, updated on 17-Aug-2024

    Summary

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    Official Symbol
    YBX3provided by VGNC
    Official Full Name
    Y-box binding protein 3provided by VGNC
    Primary source
    VGNC:VGNC:79428
    See related
    Ensembl:ENSMMUG00000022469
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    CSDA
    Orthologs
    human mouse all
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    Genomic context

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    See YBX3 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 11 NC_041764.1 (9036468..9060944)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 11 NC_027903.1 (11005002..11029719, complement)

    Chromosome 11 - NC_041764.1Genomic Context describing neighboring genes Neighboring gene taste 2 receptor member 7 Neighboring gene uncharacterized LOC107000763 Neighboring gene 10 kDa heat shock protein, mitochondrial pseudogene Neighboring gene uncharacterized LOC107000761 Neighboring gene serine/threonine/tyrosine kinase 1 Neighboring gene B-cell CLL/lymphoma 7 protein family member C pseudogene Neighboring gene mago homolog B, exon junction complex subunit

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Y-box-binding protein 3
    Names
    DNA-binding protein A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041764.1 Reference Mmul_10 Primary Assembly

      Range
      9036468..9060944
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015151066.2 → XP_015006552.2  Y-box-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      F7AAR3, I0FVV9
      Related
      ENSMMUP00000029562.4, ENSMMUT00000031599.4
      Conserved Domains (1) summary
      pfam00313
      Location:91 → 160
      CSD; 'Cold-shock' DNA-binding domain

    2. XM_015151067.2 → XP_015006553.2  Y-box-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      I0FVV9
      Conserved Domains (1) summary
      pfam00313
      Location:91 → 160
      CSD; 'Cold-shock' DNA-binding domain

    3. XM_015151068.2 → XP_015006554.2  Y-box-binding protein 3 isoform X3

      UniProtKB/TrEMBL
      I0FVV9
      Conserved Domains (1) summary
      pfam00313
      Location:91 → 160
      CSD; 'Cold-shock' DNA-binding domain

    4. XM_015151069.2 → XP_015006555.2  Y-box-binding protein 3 isoform X4

      UniProtKB/TrEMBL
      I0FVV9
      Conserved Domains (1) summary
      pfam00313
      Location:91 → 160
      CSD; 'Cold-shock' DNA-binding domain

    5. XM_015151070.2 → XP_015006556.2  Y-box-binding protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A5F7ZTW8, I0FVW0
      Related
      ENSMMUP00000068613.1, ENSMMUT00000096386.1
      Conserved Domains (1) summary
      pfam00313
      Location:91 → 160
      CSD; 'Cold-shock' DNA-binding domain

    6. XM_015151071.2 → XP_015006557.2  Y-box-binding protein 3 isoform X6

      UniProtKB/TrEMBL
      I0FVW0
      Conserved Domains (1) summary
      pfam00313
      Location:91 → 160
      CSD; 'Cold-shock' DNA-binding domain
    Nucleotide Protein
    Heading Accession and Version

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