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    TOM1L2 target of myb1 like 2 membrane trafficking protein [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 699471, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TOM1L2provided by VGNC
    Official Full Name
    target of myb1 like 2 membrane trafficking proteinprovided by VGNC
    Primary source
    VGNC:VGNC:78617
    See related
    Ensembl:ENSMMUG00000003349
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TOM1L2 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (17676078..17804484, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (17988933..18117664, complement)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene sterol regulatory element binding transcription factor 1 Neighboring gene microRNA mir-33b Neighboring gene uncharacterized LOC114673070 Neighboring gene uncharacterized LOC106993911 Neighboring gene brain protein I3 pseudogene Neighboring gene dynein regulatory complex subunit 3 Neighboring gene ATP synthase mitochondrial F1 complex assembly factor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TOM1-like protein 2
    Names
    target of myb1-like 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001260762.1 → NP_001247691.1  TOM1-like protein 2

      See identical proteins and their annotated locations for NP_001247691.1

      Status: PROVISIONAL

      Source sequence(s)
      JV046255
      UniProtKB/TrEMBL
      A0A1D5R044, G7NJ21, I0FPF0
      Related
      ENSMMUP00000053677.2, ENSMMUT00000053387.2
      Conserved Domains (2) summary
      cd16996
      Location:12 → 148
      VHS_Tom1L2; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 2
      cd14238
      Location:218 → 309
      GAT_TM1L2; canonical GAT domain found in target of Myb-like protein 2 (Tom1L2)

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      17676078..17804484 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015118674.2 → XP_014974160.1  TOM1-like protein 2 isoform X3

      UniProtKB/TrEMBL
      F7ED56
      Related
      ENSMMUP00000004463.4, ENSMMUT00000004734.4
      Conserved Domains (2) summary
      cd14238
      Location:168 → 259
      GAT_TM1L2; canonical GAT domain found in target of Myb-like protein 2 (Tom1L2)
      cl02544
      Location:12 → 98
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

    2. XM_015118673.2 → XP_014974159.1  TOM1-like protein 2 isoform X2

      UniProtKB/TrEMBL
      F7ED62, G7NJ21
      Related
      ENSMMUP00000004462.4, ENSMMUT00000004733.4
      Conserved Domains (2) summary
      cd16996
      Location:12 → 148
      VHS_Tom1L2; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 2
      cd14238
      Location:218 → 309
      GAT_TM1L2; canonical GAT domain found in target of Myb-like protein 2 (Tom1L2)

    3. XM_015118672.2 → XP_014974158.1  TOM1-like protein 2 isoform X1

      UniProtKB/TrEMBL
      G7NJ21
      Related
      ENSMMUP00000004460.4, ENSMMUT00000004731.4
      Conserved Domains (2) summary
      cd16996
      Location:12 → 148
      VHS_Tom1L2; VHS (Vps27/Hrs/STAM) domain of TOM1-like protein 2
      cd14238
      Location:218 → 309
      GAT_TM1L2; canonical GAT domain found in target of Myb-like protein 2 (Tom1L2)

    4. XM_015118677.2 → XP_014974163.1  TOM1-like protein 2 isoform X6

      UniProtKB/TrEMBL
      F7ED56
      Conserved Domains (2) summary
      cd14238
      Location:168 → 259
      GAT_TM1L2; canonical GAT domain found in target of Myb-like protein 2 (Tom1L2)
      cl02544
      Location:12 → 98
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

    5. XM_015118676.2 → XP_014974162.1  TOM1-like protein 2 isoform X5

      UniProtKB/TrEMBL
      G7NJ21
      Conserved Domains (2) summary
      cd14238
      Location:151 → 242
      GAT_TM1L2; canonical GAT domain found in target of Myb-like protein 2 (Tom1L2)
      cl02544
      Location:1 → 81
      VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily

    6. XM_015118675.2 → XP_014974161.1  TOM1-like protein 2 isoform X4

      UniProtKB/TrEMBL
      G7NJ21
      Conserved Domains (2) summary
      cd03565
      Location:12 → 152
      VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
      cl03906
      Location:165 → 256
      GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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