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    RPRD2 regulation of nuclear pre-mRNA domain containing 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 715526, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RPRD2provided by VGNC
    Official Full Name
    regulation of nuclear pre-mRNA domain containing 2provided by VGNC
    Primary source
    VGNC:VGNC:77121
    Locus tag
    EGK_01227
    See related
    Ensembl:ENSMMUG00000007303
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See RPRD2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (100670476..100790298, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (124734258..124855264)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene extracellular matrix protein 1 Neighboring gene threonyl-tRNA synthetase 2, mitochondrial Neighboring gene pre-mRNA processing factor 3 Neighboring gene mitochondrial ribosomal protein S21

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II C-terminal domain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II, holoenzyme IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    regulation of nuclear pre-mRNA domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      100670476..100790298 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015151569.2 → XP_015007055.1  regulation of nuclear pre-mRNA domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZHL1, A0A5S6R7P9, A0A8J8Y3I2, F7F708, G7MDH5
      Related
      ENSMMUP00000009570.4, ENSMMUT00000010201.4
      Conserved Domains (3) summary
      PRK03918
      Location:142 → 318
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam05109
      Location:319 → 575
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      cd17001
      Location:27 → 146
      CID_RPRD2; CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 2

    2. XM_028829384.1 → XP_028685217.1  regulation of nuclear pre-mRNA domain-containing protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A5F7ZHL1
      Conserved Domains (3) summary
      PRK03918
      Location:98 → 292
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam05109
      Location:293 → 610
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      cd17001
      Location:27 → 145
      CID_RPRD2; CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 2

    3. XM_015151581.2 → XP_015007067.1  regulation of nuclear pre-mRNA domain-containing protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A5F7ZHL1, A0A5F7ZL95
      Related
      ENSMMUP00000065944.1, ENSMMUT00000091041.1
      Conserved Domains (3) summary
      PRK03918
      Location:142 → 318
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam05109
      Location:319 → 636
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      cd17001
      Location:27 → 146
      CID_RPRD2; CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 2

    4. XM_015151587.2 → XP_015007073.1  regulation of nuclear pre-mRNA domain-containing protein 2 isoform X5

      Conserved Domains (3) summary
      PRK03918
      Location:98 → 292
      PRK03918; DNA double-strand break repair ATPase Rad50
      pfam05109
      Location:293 → 549
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      cd17001
      Location:27 → 145
      CID_RPRD2; CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 2

    5. XM_015151571.2 → XP_015007057.1  regulation of nuclear pre-mRNA domain-containing protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A5F7ZHL1, A0A5F8A4G6
      Related
      ENSMMUP00000072833.1, ENSMMUT00000086840.1
      Conserved Domains (3) summary
      pfam05109
      Location:293 → 549
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      cd17001
      Location:27 → 145
      CID_RPRD2; CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 2
      NF033930
      Location:96 → 378
      pneumo_PspA; pneumococcal surface protein A
    Nucleotide Protein
    Heading Accession and Version

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