U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PATL1 PAT1 homolog 1, processing body mRNA decay factor [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 699207, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PATL1provided by VGNC
    Official Full Name
    PAT1 homolog 1, processing body mRNA decay factorprovided by VGNC
    Primary source
    VGNC:VGNC:75684
    See related
    Ensembl:ENSMMUG00000017287
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PATL1 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (14322627..14355818)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (14418298..14451485)

    Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene syntaxin 3 Neighboring gene olfactory receptor 10V1 Neighboring gene uncharacterized LOC106993228 Neighboring gene oxysterol binding protein Neighboring gene transfer RNA phenylalanine (anticodon GAA)

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in P-body assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein PAT1 homolog 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041767.1 Reference Mmul_10 Primary Assembly

      Range
      14322627..14355818
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001089844.4 → XP_001089844.1  protein PAT1 homolog 1 isoform X2

      See identical proteins and their annotated locations for XP_001089844.1

      UniProtKB/TrEMBL
      A0A5F7ZUV1, G7ND54
      Related
      ENSMMUP00000068415.1, ENSMMUT00000084032.1
      Conserved Domains (1) summary
      pfam09770
      Location:396 → 613
      PAT1; Topoisomerase II-associated protein PAT1

    2. XM_015114085.2 → XP_014969571.1  protein PAT1 homolog 1 isoform X1

      UniProtKB/TrEMBL
      F7HUF8
      Related
      ENSMMUP00000022745.3, ENSMMUT00000024302.4
      Conserved Domains (1) summary
      cl25764
      Location:420 → 637
      PAT1; Topoisomerase II-associated protein PAT1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.