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    SMTN smoothelin [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 716424, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SMTNprovided by VGNC
    Official Full Name
    smoothelinprovided by VGNC
    Primary source
    VGNC:VGNC:77661
    See related
    Ensembl:ENSMMUG00000004675
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SMTN in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (20412670..20435977, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (72947444..72970730)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene inositol polyphosphate-5-phosphatase J Neighboring gene selenoprotein M Neighboring gene uncharacterized LOC114670375 Neighboring gene uncharacterized LOC107000647

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of filamentous actin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule organizing center IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    smoothelin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      20412670..20435977 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015150169.2 → XP_015005655.1  smoothelin isoform X10

      UniProtKB/TrEMBL
      A0A1D5QTV4
      Conserved Domains (2) summary
      cd00014
      Location:802 → 906
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam12510
      Location:570 → 619
      Smoothelin; Smoothelin cytoskeleton protein

    2. XM_015150170.2 → XP_015005656.1  smoothelin isoform X11

      UniProtKB/TrEMBL
      A0A1D5QTV4, F6RUG5
      Related
      ENSMMUP00000006213.3, ENSMMUT00000006604.4
      Conserved Domains (2) summary
      cd00014
      Location:802 → 902
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam12510
      Location:570 → 619
      Smoothelin; Smoothelin cytoskeleton protein

    3. XM_028827838.1 → XP_028683671.1  smoothelin isoform X9

      UniProtKB/TrEMBL
      G7N3M2
      Related
      ENSMMUP00000006214.4, ENSMMUT00000006605.4
      Conserved Domains (2) summary
      cd00014
      Location:833 → 937
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam12510
      Location:601 → 650
      Smoothelin; Smoothelin cytoskeleton protein

    4. XM_015150173.2 → XP_015005659.1  smoothelin isoform X12

      UniProtKB/TrEMBL
      F6RUF8, G7N3M2
      Conserved Domains (2) summary
      cd00014
      Location:887 → 991
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam12510
      Location:655 → 704
      Smoothelin; Smoothelin cytoskeleton protein

    5. XM_028827836.1 → XP_028683669.1  smoothelin isoform X7

      UniProtKB/TrEMBL
      A0A1D5QTV4
      Conserved Domains (2) summary
      cd00014
      Location:765 → 869
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam12510
      Location:609 → 658
      Smoothelin; Smoothelin cytoskeleton protein

    6. XM_028827837.1 → XP_028683670.1  smoothelin isoform X8

      UniProtKB/TrEMBL
      A0A1D5QTV4
      Conserved Domains (2) summary
      pfam00307
      Location:765 → 865
      CH; Calponin homology (CH) domain
      pfam12510
      Location:609 → 658
      Smoothelin; Smoothelin cytoskeleton protein

    7. XM_028827832.1 → XP_028683665.1  smoothelin isoform X3

      UniProtKB/TrEMBL
      A0A1D5QTV4
      Conserved Domains (3) summary
      PTZ00121
      Location:583 → 813
      PTZ00121; MAEBL; Provisional
      cd00014
      Location:841 → 945
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam12510
      Location:609 → 658
      Smoothelin; Smoothelin cytoskeleton protein

    8. XM_028827833.1 → XP_028683666.1  smoothelin isoform X4

      UniProtKB/TrEMBL
      A0A1D5QTV4, F6RUE4
      Related
      ENSMMUP00000006215.4, ENSMMUT00000006606.4
      Conserved Domains (3) summary
      PTZ00121
      Location:583 → 805
      PTZ00121; MAEBL; Provisional
      pfam00307
      Location:841 → 941
      CH; Calponin homology (CH) domain
      pfam12510
      Location:609 → 658
      Smoothelin; Smoothelin cytoskeleton protein

    9. XM_028827834.1 → XP_028683667.1  smoothelin isoform X5

      UniProtKB/TrEMBL
      G7N3M2
      Conserved Domains (2) summary
      cd00014
      Location:796 → 900
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam12510
      Location:640 → 689
      Smoothelin; Smoothelin cytoskeleton protein

    10. XM_028827835.1 → XP_028683668.1  smoothelin isoform X6

      UniProtKB/TrEMBL
      G7N3M2
      Conserved Domains (2) summary
      pfam00307
      Location:796 → 896
      CH; Calponin homology (CH) domain
      pfam12510
      Location:640 → 689
      Smoothelin; Smoothelin cytoskeleton protein

    11. XM_028827830.1 → XP_028683663.1  smoothelin isoform X1

      UniProtKB/TrEMBL
      G7N3M2
      Conserved Domains (2) summary
      cd00014
      Location:872 → 976
      CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
      pfam12510
      Location:640 → 689
      Smoothelin; Smoothelin cytoskeleton protein

    12. XM_028827831.1 → XP_028683664.1  smoothelin isoform X2

      UniProtKB/TrEMBL
      G7N3M2
      Conserved Domains (2) summary
      pfam00307
      Location:872 → 972
      CH; Calponin homology (CH) domain
      pfam12510
      Location:640 → 689
      Smoothelin; Smoothelin cytoskeleton protein
    Nucleotide Protein
    Heading Accession and Version

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