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    VPS13D vacuolar protein sorting 13 homolog D [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 722775, updated on 17-Aug-2024

    Summary

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    Official Symbol
    VPS13Dprovided by VGNC
    Official Full Name
    vacuolar protein sorting 13 homolog Dprovided by VGNC
    Primary source
    VGNC:VGNC:100186
    See related
    Ensembl:ENSMMUG00000021449
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See VPS13D in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    73
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (211938665..212222859, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (11525803..11808169)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene arylacetamide deacetylase like 4 Neighboring gene dehydrogenase/reductase 3 Neighboring gene U6atac minor spliceosomal RNA Neighboring gene small nucleolar RNA ACA59 Neighboring gene small nucleolar RNA U3 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene TNF receptor superfamily member 1B Neighboring gene uncharacterized LOC114674118

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrion organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein retention in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein targeting to vacuole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extrinsic component of membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 13D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      211938665..212222859 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028839632.1 → XP_028695465.1  vacuolar protein sorting-associated protein 13D isoform X1

      UniProtKB/TrEMBL
      F7EAB9, H9FWK4
      Conserved Domains (4) summary
      COG5043
      Location:1 → 1269
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      cd14306
      Location:2642 → 2677
      UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins
      pfam06650
      Location:3276 → 3559
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16908
      Location:139 → 356
      VPS13; Vacuolar sorting-associated protein 13, N-terminal

    2. XM_028839639.1 → XP_028695472.1  vacuolar protein sorting-associated protein 13D isoform X4

      UniProtKB/TrEMBL
      A0A5F7ZIP0
      Related
      ENSMMUP00000064507.1, ENSMMUT00000092306.1
      Conserved Domains (3) summary
      COG5043
      Location:1 → 1269
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      pfam06650
      Location:3251 → 3534
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16908
      Location:139 → 356
      VPS13; Vacuolar sorting-associated protein 13, N-terminal

    3. XM_015113831.2 → XP_014969317.2  vacuolar protein sorting-associated protein 13D isoform X5

      UniProtKB/TrEMBL
      A0A5F7ZN73, F7EAB9, H9FWK4
      Related
      ENSMMUP00000067067.1, ENSMMUT00000082092.1
      Conserved Domains (4) summary
      COG5043
      Location:1 → 1269
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      cd14306
      Location:2642 → 2677
      UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins
      pfam06650
      Location:3250 → 3533
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16908
      Location:139 → 356
      VPS13; Vacuolar sorting-associated protein 13, N-terminal

    4. XM_015113758.2 → XP_014969244.2  vacuolar protein sorting-associated protein 13D isoform X3

      UniProtKB/TrEMBL
      F7EAB9, H9FWK4
      Conserved Domains (4) summary
      COG5043
      Location:1 → 1269
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      cd14306
      Location:2642 → 2677
      UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins
      pfam06650
      Location:3251 → 3534
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16908
      Location:139 → 356
      VPS13; Vacuolar sorting-associated protein 13, N-terminal

    5. XM_015113705.2 → XP_014969191.2  vacuolar protein sorting-associated protein 13D isoform X2

      UniProtKB/TrEMBL
      A0A5K1TWX9, F7EAB9, H9FWK4
      Related
      ENSMMUP00000028259.4, ENSMMUT00000030197.4
      Conserved Domains (4) summary
      COG5043
      Location:1 → 1269
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      cd14306
      Location:2642 → 2677
      UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins
      pfam06650
      Location:3275 → 3558
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16908
      Location:139 → 356
      VPS13; Vacuolar sorting-associated protein 13, N-terminal

    6. XM_015113648.2 → XP_014969134.2  vacuolar protein sorting-associated protein 13D isoform X1

      UniProtKB/TrEMBL
      F7EAB9, H9FWK4
      Conserved Domains (4) summary
      COG5043
      Location:1 → 1269
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      cd14306
      Location:2642 → 2677
      UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins
      pfam06650
      Location:3276 → 3559
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16908
      Location:139 → 356
      VPS13; Vacuolar sorting-associated protein 13, N-terminal

    7. XM_028839659.1 → XP_028695492.1  vacuolar protein sorting-associated protein 13D isoform X8

      UniProtKB/TrEMBL
      A0A5F7ZFU0
      Conserved Domains (4) summary
      COG5043
      Location:3155 → 3617
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      cd14306
      Location:1961 → 1996
      UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins
      pfam06650
      Location:2595 → 2878
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16910
      Location:20 → 213
      VPS13_mid_rpt; Repeating coiled region of VPS13

    8. XM_015113981.2 → XP_014969467.2  vacuolar protein sorting-associated protein 13D isoform X6

      UniProtKB/TrEMBL
      F7EAB9, H9FWK4
      Conserved Domains (4) summary
      COG5043
      Location:1 → 1269
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      cd14306
      Location:2642 → 2677
      UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins
      pfam06650
      Location:3276 → 3559
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16908
      Location:139 → 356
      VPS13; Vacuolar sorting-associated protein 13, N-terminal

    9. XM_015113916.2 → XP_014969402.2  vacuolar protein sorting-associated protein 13D isoform X6

      UniProtKB/TrEMBL
      F7EAB9, H9FWK4
      Conserved Domains (4) summary
      COG5043
      Location:1 → 1269
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      cd14306
      Location:2642 → 2677
      UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins
      pfam06650
      Location:3276 → 3559
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16908
      Location:139 → 356
      VPS13; Vacuolar sorting-associated protein 13, N-terminal

    10. XM_015114049.2 → XP_014969535.2  vacuolar protein sorting-associated protein 13D isoform X7

      UniProtKB/TrEMBL
      F7EAB9, H9FWK4
      Conserved Domains (5) summary
      COG5043
      Location:1 → 1269
      MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
      cd14306
      Location:2642 → 2677
      UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins
      pfam06650
      Location:3276 → 3559
      SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
      pfam16909
      Location:3984 → 4111
      VPS13_C; Vacuolar-sorting-associated 13 protein C-terminal
      pfam16908
      Location:139 → 356
      VPS13; Vacuolar sorting-associated protein 13, N-terminal
    Nucleotide Protein
    Heading Accession and Version

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