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    CHD6 chromodomain helicase DNA binding protein 6 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 696091, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CHD6provided by VGNC
    Official Full Name
    chromodomain helicase DNA binding protein 6provided by VGNC
    Primary source
    VGNC:VGNC:71022
    See related
    Ensembl:ENSMMUG00000020458
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CHD6 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (76663657..76876470, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (22275659..22488129)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114670480 Neighboring gene small nucleolar RNA U3 Neighboring gene uncharacterized LOC114670481 Neighboring gene small nucleolar RNA SNORA26 Neighboring gene neurofilament heavy polypeptide pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 6
    Names
    chromodomain-helicase-DNA-binding protein 6-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      76663657..76876470 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015149001.2 → XP_015004487.1  chromodomain-helicase-DNA-binding protein 6 isoform X1

      UniProtKB/TrEMBL
      F6VZQ8, F6VZT5, H9G0L7
      Related
      ENSMMUP00000026935.3, ENSMMUT00000028784.4
      Conserved Domains (5) summary
      cd00046
      Location:480 → 629
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:464 → 751
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:783 → 897
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:376 → 429
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      cl02688
      Location:2403 → 2438
      BRK; BRK domain

    2. XM_015149002.2 → XP_015004488.1  chromodomain-helicase-DNA-binding protein 6 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QMI7, F6VZS6
      Related
      ENSMMUP00000026932.3, ENSMMUT00000028781.3
      Conserved Domains (5) summary
      PLN03142
      Location:438 → 963
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:350 → 408
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:266 → 331
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18058
      Location:439 → 660
      DEXHc_CHD6; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 6
      cl02688
      Location:2381 → 2416
      BRK; BRK domain

    3. XM_028828422.1 → XP_028684255.1  chromodomain-helicase-DNA-binding protein 6 isoform X2

      UniProtKB/TrEMBL
      A0A1D5QMI7, F6VZS6
      Related
      ENSMMUP00000049262.2, ENSMMUT00000067278.2
      Conserved Domains (5) summary
      PLN03142
      Location:438 → 963
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18663
      Location:350 → 408
      CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18668
      Location:266 → 331
      CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
      cd18058
      Location:439 → 660
      DEXHc_CHD6; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 6
      cl02688
      Location:2381 → 2416
      BRK; BRK domain
    Nucleotide Protein
    Heading Accession and Version

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