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    SEMA6C semaphorin 6C [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 709464, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SEMA6Cprovided by VGNC
    Official Full Name
    semaphorin 6Cprovided by VGNC
    Primary source
    VGNC:VGNC:77172
    See related
    Ensembl:ENSMMUG00000007643
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SEMA6C in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (99966038..99981125)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (125621026..125635813, complement)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene tropomodulin 4 Neighboring gene sodium channel modifier 1 Neighboring gene LysM domain containing 1 Neighboring gene TNF alpha induced protein 8 like 2 Neighboring gene GA binding protein transcription factor subunit beta 2 Neighboring gene MLLT11 transcription factor 7 cofactor Neighboring gene CDC42 small effector 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-6C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001265715.1 → NP_001252644.1  semaphorin-6C precursor

      See identical proteins and their annotated locations for NP_001252644.1

      Status: PROVISIONAL

      Source sequence(s)
      JV635659
      UniProtKB/TrEMBL
      A0A1D5QJ77, A0A1D5QJA7, F7AIP9, I2CVL4
      Related
      ENSMMUP00000048130.2, ENSMMUT00000062243.2
      Conserved Domains (2) summary
      cd11268
      Location:53 → 517
      Sema_6C; The Sema domain, a protein interacting module, of semaphorin 6C (Sema6C, also called semaphorin Y)
      pfam01437
      Location:518 → 570
      PSI; Plexin repeat

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      99966038..99981125
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015150788.2 → XP_015006274.1  semaphorin-6C isoform X2

      UniProtKB/TrEMBL
      F7AIP9, F7AIQ7
      Related
      ENSMMUP00000010045.4, ENSMMUT00000010708.4
      Conserved Domains (2) summary
      cd11268
      Location:53 → 517
      Sema_6C; The Sema domain, a protein interacting module, of semaphorin 6C (Sema6C, also called semaphorin Y)
      pfam01437
      Location:518 → 570
      PSI; Plexin repeat

    2. XM_015150780.2 → XP_015006266.1  semaphorin-6C isoform X1

      UniProtKB/TrEMBL
      F7AIP9
      Conserved Domains (2) summary
      pfam01437
      Location:456 → 508
      PSI; Plexin repeat
      cl15693
      Location:16 → 455
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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