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    SYS1 SYS1 golgi trafficking protein [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 717604, updated on 5-Mar-2024

    Summary

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    Gene symbol
    SYS1
    Gene description
    SYS1 golgi trafficking protein
    Locus tag
    EGK_02365
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    C20orf35
    Orthologs
    human mouse all
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    Genomic context

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    See SYS1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (80587572..80600985)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (19055547..19105303, complement)

    Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene matrilin 4 Neighboring gene recombination signal binding protein for immunoglobulin kappa J region like Neighboring gene syndecan 4 Neighboring gene uncharacterized LOC107000389 Neighboring gene TP53 target 5 Neighboring gene dysbindin domain containing 2 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class T

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Form deprivation modulates retinal neurogenesis in primate experimental myopia. Tkatchenko AV, et al. Proc Natl Acad Sci U S A, 2006 Mar 21. PMID 16537371, Free PMC Article
    2. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    3. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi to endosome transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in Golgi to plasma membrane protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein localization to Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SYS1 homolog
    Names
    Protein SYS1-like protein
    SYS1 Golgi-localized integral membrane protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194746.3 → NP_001181675.1  protein SYS1 homolog

      See identical proteins and their annotated locations for NP_001181675.1

      Status: VALIDATED

      Source sequence(s)
      QNVO02000030
      UniProtKB/TrEMBL
      A0A8J8XJD0, F7FE74, H9EPR9
      Conserved Domains (1) summary
      pfam09801
      Location:5 → 148
      SYS1; Integral membrane protein S linking to the trans Golgi network

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041763.1 Reference Mmul_10 Primary Assembly

      Range
      80587572..80600985
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015148856.2 → XP_015004342.1  protein SYS1 homolog isoform X2

      UniProtKB/TrEMBL
      F7FE74
      Conserved Domains (1) summary
      pfam09801
      Location:5 → 148
      SYS1; Integral membrane protein S linking to the trans Golgi network

    2. XM_015148858.2 → XP_015004344.1  protein SYS1 homolog isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q437
      Conserved Domains (1) summary
      pfam09801
      Location:5 → 76
      SYS1; Integral membrane protein S linking to the trans Golgi network
    Nucleotide Protein
    Heading Accession and Version

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