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    CC2D1A coiled-coil and C2 domain containing 1A [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718483, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CC2D1Aprovided by VGNC
    Official Full Name
    coiled-coil and C2 domain containing 1Aprovided by VGNC
    Primary source
    VGNC:VGNC:70677
    See related
    Ensembl:ENSMMUG00000008320
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CC2D1A in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (13510373..13535385)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (13911969..13936778)

    Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene nanos C2HC-type zinc finger 3 Neighboring gene microRNA mir-181c Neighboring gene microRNA mir-181d Neighboring gene break repair meiotic recombinase recruitment factor 1 Neighboring gene podocan-like protein 1 Neighboring gene podocan-like protein 1 Neighboring gene DDB1 and CUL4 associated factor 15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    coiled-coil and C2 domain-containing protein 1A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041772.1 Reference Mmul_10 Primary Assembly

      Range
      13510373..13535385
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015123099.2 → XP_014978585.1  coiled-coil and C2 domain-containing protein 1A isoform X1

      UniProtKB/TrEMBL
      F7HU03, H9FW78
      Related
      ENSMMUP00000010910.3, ENSMMUT00000011637.4
      Conserved Domains (2) summary
      smart00685
      Location:349 → 407
      DM14; Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241
      cd08690
      Location:652 → 809
      C2_Freud-1; C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

    2. XM_015123101.2 → XP_014978587.1  coiled-coil and C2 domain-containing protein 1A isoform X3

      UniProtKB/TrEMBL
      H9FW78
      Conserved Domains (2) summary
      smart00685
      Location:349 → 407
      DM14; Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241
      cd08690
      Location:652 → 809
      C2_Freud-1; C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

    3. XM_015123100.2 → XP_014978586.1  coiled-coil and C2 domain-containing protein 1A isoform X2

      UniProtKB/TrEMBL
      H9FW78
      Related
      ENSMMUP00000031782.3, ENSMMUT00000038701.3
      Conserved Domains (2) summary
      smart00685
      Location:349 → 407
      DM14; Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241
      cd08690
      Location:651 → 808
      C2_Freud-1; C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

    4. XM_015123102.2 → XP_014978588.1  coiled-coil and C2 domain-containing protein 1A isoform X4

      UniProtKB/TrEMBL
      H9FW78
      Conserved Domains (2) summary
      smart00685
      Location:349 → 407
      DM14; Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241
      cd08690
      Location:648 → 805
      C2_Freud-1; C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

    5. XM_015123103.2 → XP_014978589.1  coiled-coil and C2 domain-containing protein 1A isoform X5

      UniProtKB/TrEMBL
      H9FW78
      Conserved Domains (2) summary
      smart00685
      Location:349 → 407
      DM14; Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241
      cd08690
      Location:647 → 804
      C2_Freud-1; C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)
    Nucleotide Protein
    Heading Accession and Version

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