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    CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 705815, updated on 5-Mar-2024

    Summary

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    Gene symbol
    CLN3
    Gene description
    CLN3 lysosomal/endosomal transmembrane protein, battenin
    See related
    Ensembl:ENSMMUG00000000700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    battenin
    Orthologs
    human mouse all
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    Genomic context

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    See CLN3 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (26990708..27009938, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (27709962..27729068)

    Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene ataxin 2 like Neighboring gene eukaryotic translation initiation factor 3 subunit C Neighboring gene apolipoprotein B receptor Neighboring gene interleukin 27 Neighboring gene nuclear protein 1, transcriptional regulator

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in lysosomal lumen acidification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lysosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    battenin
    Names
    CLN3, battenin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041773.1 Reference Mmul_10 Primary Assembly

      Range
      26990708..27009938 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015125927.2 → XP_014981413.1  battenin isoform X1

      UniProtKB/TrEMBL
      A0A8J8XWH7, F6YSZ0, F6YTI2, F6YTJ3, G7NQH0, H9EWF2
      Related
      ENSMMUP00000000944.4, ENSMMUT00000001007.4
      Conserved Domains (1) summary
      pfam02487
      Location:40 → 437
      CLN3; CLN3 protein

    2. XM_028841349.1 → XP_028697182.1  battenin isoform X1

      UniProtKB/TrEMBL
      A0A8J8XWH7, F6YSZ0, F6YTI2, F6YTJ3, G7NQH0, H9EWF2
      Conserved Domains (1) summary
      pfam02487
      Location:40 → 437
      CLN3; CLN3 protein

    3. XM_028841350.1 → XP_028697183.1  battenin isoform X1

      UniProtKB/TrEMBL
      A0A8J8XWH7, F6YSZ0, F6YTI2, F6YTJ3, G7NQH0, H9EWF2
      Conserved Domains (1) summary
      pfam02487
      Location:40 → 437
      CLN3; CLN3 protein

    4. XM_028841358.1 → XP_028697191.1  battenin isoform X5

      UniProtKB/TrEMBL
      F6YTF2
      Conserved Domains (1) summary
      pfam02487
      Location:41 → 351
      CLN3; CLN3 protein

    5. XM_028841351.1 → XP_028697184.1  battenin isoform X1

      UniProtKB/TrEMBL
      A0A8J8XWH7, F6YSZ0, F6YTI2, F6YTJ3, G7NQH0, H9EWF2
      Related
      ENSMMUP00000000952.4, ENSMMUT00000001015.4
      Conserved Domains (1) summary
      pfam02487
      Location:40 → 437
      CLN3; CLN3 protein

    6. XM_028841357.1 → XP_028697190.1  battenin isoform X5

      UniProtKB/TrEMBL
      F6YTF2
      Related
      ENSMMUP00000065831.1, ENSMMUT00000108841.1
      Conserved Domains (1) summary
      pfam02487
      Location:41 → 351
      CLN3; CLN3 protein

    7. XM_028841360.1 → XP_028697193.1  battenin isoform X5

      UniProtKB/TrEMBL
      F6YTF2
      Conserved Domains (1) summary
      pfam02487
      Location:41 → 351
      CLN3; CLN3 protein

    8. XM_028841356.1 → XP_028697189.1  battenin isoform X4

      UniProtKB/TrEMBL
      A0A8J8XWH7, F6YSX9, G7NQH0, H9EWF2
      Related
      ENSMMUP00000000953.3, ENSMMUT00000001016.4
      Conserved Domains (1) summary
      pfam02487
      Location:44 → 354
      CLN3; CLN3 protein

    9. XM_015125928.2 → XP_014981414.1  battenin isoform X2

      UniProtKB/TrEMBL
      A0A8J8XWH7, G7NQH0, H9EWF2
      Conserved Domains (1) summary
      pfam02487
      Location:44 → 387
      CLN3; CLN3 protein

    10. XM_028841359.1 → XP_028697192.1  battenin isoform X5

      UniProtKB/TrEMBL
      F6YTF2
      Related
      ENSMMUP00000000949.4, ENSMMUT00000001012.4
      Conserved Domains (1) summary
      pfam02487
      Location:41 → 351
      CLN3; CLN3 protein

    11. XM_028841355.1 → XP_028697188.1  battenin isoform X3

      UniProtKB/TrEMBL
      A0A8J8XWH7, G7NQH0, H9EWF2
      Conserved Domains (1) summary
      pfam02487
      Location:1 → 383
      CLN3; CLN3 protein

    12. XM_015125926.2 → XP_014981412.1  battenin isoform X1

      UniProtKB/TrEMBL
      A0A8J8XWH7, F6YSZ0, F6YTI2, F6YTJ3, G7NQH0, H9EWF2
      Conserved Domains (1) summary
      pfam02487
      Location:40 → 437
      CLN3; CLN3 protein

    13. XM_028841354.1 → XP_028697187.1  battenin isoform X3

      UniProtKB/TrEMBL
      A0A8J8XWH7, G7NQH0, H9EWF2
      Conserved Domains (1) summary
      pfam02487
      Location:1 → 383
      CLN3; CLN3 protein

    14. XM_028841352.1 → XP_028697185.1  battenin isoform X2

      UniProtKB/TrEMBL
      A0A8J8XWH7, G7NQH0, H9EWF2
      Conserved Domains (1) summary
      pfam02487
      Location:44 → 387
      CLN3; CLN3 protein

    15. XM_028841353.1 → XP_028697186.1  battenin isoform X2

      UniProtKB/TrEMBL
      A0A8J8XWH7, G7NQH0, H9EWF2
      Conserved Domains (1) summary
      pfam02487
      Location:44 → 387
      CLN3; CLN3 protein
    Nucleotide Protein
    Heading Accession and Version

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