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    TAF1 TATA-box binding protein associated factor 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 698800, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TAF1provided by VGNC
    Official Full Name
    TATA-box binding protein associated factor 1provided by VGNC
    Primary source
    VGNC:VGNC:97834
    See related
    Ensembl:ENSMMUG00000005663
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TAF1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) X NC_041774.1 (68359459..68457469)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) X NC_027913.1 (66100856..66199461)

    Chromosome X - NC_041774.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCHC-type and RNA-binding motif-containing protein 1-like Neighboring gene RHOG family member 2, pseudogene Neighboring gene polyadenylate-binding protein 2 pseudogene Neighboring gene small nucleolar RNA U13 Neighboring gene keratin, type II cytoskeletal 8 pseudogene Neighboring gene inhibitor of growth protein 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II general transcription initiation factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables TBP-class protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in RNA polymerase II preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription factor TFIID complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription initiation factor TFIID subunit 1
    Names
    TBP-associated factor 1
    transcription initiation factor TFIID subunit 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041774.1 Reference Mmul_10 Primary Assembly

      Range
      68359459..68457469
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028842258.1 → XP_028698091.1  transcription initiation factor TFIID subunit 1 isoform X4

      UniProtKB/TrEMBL
      G7N6Q7
      Conserved Domains (6) summary
      cd05511
      Location:1507 → 1619
      Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
      pfam04147
      Location:1691 → 1796
      Nop14; Nop14-like family
      pfam09247
      Location:29 → 86
      TBP-binding; TATA box-binding protein binding
      pfam12157
      Location:565 → 1028
      DUF3591; Protein of unknown function (DUF3591)
      pfam14797
      Location:1755 → 1846
      SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
      pfam15288
      Location:1261 → 1296
      zf-CCHC_6; Zinc knuckle

    2. XM_028842255.1 → XP_028698088.1  transcription initiation factor TFIID subunit 1 isoform X1

      UniProtKB/TrEMBL
      G7N6Q7
      Conserved Domains (6) summary
      cd05511
      Location:1528 → 1640
      Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
      PHA03169
      Location:1665 → 1899
      PHA03169; hypothetical protein; Provisional
      pfam04147
      Location:1712 → 1817
      Nop14; Nop14-like family
      pfam09247
      Location:29 → 86
      TBP-binding; TATA box-binding protein binding
      pfam12157
      Location:586 → 1049
      DUF3591; Protein of unknown function (DUF3591)
      pfam15288
      Location:1282 → 1317
      zf-CCHC_6; Zinc knuckle

    3. XM_028842256.1 → XP_028698089.1  transcription initiation factor TFIID subunit 1 isoform X2

      UniProtKB/TrEMBL
      G7N6Q7
      Conserved Domains (6) summary
      cd05511
      Location:1527 → 1639
      Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
      PHA03169
      Location:1664 → 1898
      PHA03169; hypothetical protein; Provisional
      pfam04147
      Location:1711 → 1816
      Nop14; Nop14-like family
      pfam09247
      Location:29 → 86
      TBP-binding; TATA box-binding protein binding
      pfam12157
      Location:586 → 1049
      DUF3591; Protein of unknown function (DUF3591)
      pfam15288
      Location:1281 → 1316
      zf-CCHC_6; Zinc knuckle

    4. XM_028842259.1 → XP_028698092.1  transcription initiation factor TFIID subunit 1 isoform X5

      UniProtKB/TrEMBL
      F6VX35, G7N6Q7
      Related
      ENSMMUP00000007484.4, ENSMMUT00000007963.4
      Conserved Domains (5) summary
      cd05511
      Location:1528 → 1640
      Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
      pfam09247
      Location:29 → 86
      TBP-binding; TATA box-binding protein binding
      pfam12157
      Location:586 → 1049
      DUF3591; Protein of unknown function (DUF3591)
      pfam14797
      Location:1742 → 1833
      SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
      pfam15288
      Location:1282 → 1317
      zf-CCHC_6; Zinc knuckle

    5. XM_028842260.1 → XP_028698093.1  transcription initiation factor TFIID subunit 1 isoform X6

      UniProtKB/TrEMBL
      F6UC59, G7N6Q7, H9EUL2
      Related
      ENSMMUP00000040985.3, ENSMMUT00000047948.3
      Conserved Domains (5) summary
      cd05511
      Location:1528 → 1640
      Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
      pfam09247
      Location:29 → 86
      TBP-binding; TATA box-binding protein binding
      pfam12157
      Location:586 → 1049
      DUF3591; Protein of unknown function (DUF3591)
      pfam14797
      Location:1740 → 1831
      SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
      pfam15288
      Location:1282 → 1317
      zf-CCHC_6; Zinc knuckle

    6. XM_028842261.1 → XP_028698094.1  transcription initiation factor TFIID subunit 1 isoform X7

      UniProtKB/TrEMBL
      G7N6Q7, H9Z1X9
      Conserved Domains (5) summary
      cd05511
      Location:1507 → 1619
      Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
      pfam09247
      Location:29 → 86
      TBP-binding; TATA box-binding protein binding
      pfam12157
      Location:565 → 1028
      DUF3591; Protein of unknown function (DUF3591)
      pfam14797
      Location:1719 → 1810
      SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
      pfam15288
      Location:1261 → 1296
      zf-CCHC_6; Zinc knuckle

    7. XM_028842257.1 → XP_028698090.1  transcription initiation factor TFIID subunit 1 isoform X3

      UniProtKB/TrEMBL
      G7N6Q7, H9FQ38
      Related
      ENSMMUP00000076743.1, ENSMMUT00000107227.1
      Conserved Domains (6) summary
      cd05511
      Location:1528 → 1640
      Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
      PHA03169
      Location:1665 → 1897
      PHA03169; hypothetical protein; Provisional
      pfam04147
      Location:1710 → 1815
      Nop14; Nop14-like family
      pfam09247
      Location:29 → 86
      TBP-binding; TATA box-binding protein binding
      pfam12157
      Location:586 → 1049
      DUF3591; Protein of unknown function (DUF3591)
      pfam15288
      Location:1282 → 1317
      zf-CCHC_6; Zinc knuckle
    Nucleotide Protein
    Heading Accession and Version

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