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    ZKSCAN1 zinc finger with KRAB and SCAN domains 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 710407, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ZKSCAN1provided by VGNC
    Official Full Name
    zinc finger with KRAB and SCAN domains 1provided by VGNC
    Primary source
    VGNC:VGNC:78899
    See related
    Ensembl:ENSMMUG00000008601
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ZKSCAN1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (42193497..42224511)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (125527350..125551408)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene alpha-2-glycoprotein 1, zinc-binding Neighboring gene gap junction gamma-3 protein pseudogene Neighboring gene uncharacterized LOC114676875 Neighboring gene zinc finger and SCAN domain containing 21

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein with KRAB and SCAN domains 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194124.2 → NP_001181053.2  zinc finger protein with KRAB and SCAN domains 1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000311
      UniProtKB/TrEMBL
      F6UAQ9
      Related
      ENSMMUP00000011281.3, ENSMMUT00000012027.4
      Conserved Domains (4) summary
      smart00431
      Location:52 → 162
      SCAN; leucine rich region
      cd07765
      Location:227 → 266
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
      COG5048
      Location:333 → 537
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:435 → 455
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      42193497..42224511
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028844987.1 → XP_028700820.1  zinc finger protein with KRAB and SCAN domains 1 isoform X1

      Conserved Domains (2) summary
      smart00431
      Location:52 → 162
      SCAN; leucine rich region
      cd07765
      Location:227 → 266
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials