U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    HAPLN2 hyaluronan and proteoglycan link protein 2 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718500, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    HAPLN2provided by VGNC
    Official Full Name
    hyaluronan and proteoglycan link protein 2provided by VGNC
    Primary source
    VGNC:VGNC:106378
    See related
    Ensembl:ENSMMUG00000060011
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See HAPLN2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (94341943..94348259, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (131245605..131251668)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene nestin Neighboring gene brevican Neighboring gene uncharacterized LOC106992915 Neighboring gene G-patch domain containing 4 Neighboring gene NAD(P)HX epimerase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hyaluronic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    hyaluronan and proteoglycan link protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001265852.1 → NP_001252781.1  hyaluronan and proteoglycan link protein 2 precursor

      See identical proteins and their annotated locations for NP_001252781.1

      Status: PROVISIONAL

      Source sequence(s)
      JU322554
      UniProtKB/TrEMBL
      F7FY38, G7ME04
      Related
      ENSMMUP00000076060.1, ENSMMUT00000080968.1
      Conserved Domains (4) summary
      cd03518
      Location:148 → 241
      Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
      cd03519
      Location:250 → 337
      Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
      cd00096
      Location:45 → 47
      Ig; Ig strand A' [structural motif]
      cl11960
      Location:45 → 150
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      94341943..94348259 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028845966.1 → XP_028701799.1  hyaluronan and proteoglycan link protein 2 isoform X2

      UniProtKB/TrEMBL
      F7FY38, G7ME04
      Conserved Domains (4) summary
      cd03518
      Location:148 → 241
      Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
      cd03519
      Location:250 → 337
      Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
      cd00096
      Location:45 → 47
      Ig; Ig strand A' [structural motif]
      cl11960
      Location:45 → 150
      Ig; Immunoglobulin domain

    2. XM_028845977.1 → XP_028701810.1  hyaluronan and proteoglycan link protein 2 isoform X2

      UniProtKB/TrEMBL
      F7FY38, G7ME04
      Conserved Domains (4) summary
      cd03518
      Location:148 → 241
      Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
      cd03519
      Location:250 → 337
      Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
      cd00096
      Location:45 → 47
      Ig; Ig strand A' [structural motif]
      cl11960
      Location:45 → 150
      Ig; Immunoglobulin domain

    3. XM_028845956.1 → XP_028701789.1  hyaluronan and proteoglycan link protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A5F7ZFE0, G7ME04
      Related
      ENSMMUP00000063349.1, ENSMMUT00000095579.1
      Conserved Domains (3) summary
      cd03518
      Location:165 → 258
      Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
      cd03519
      Location:267 → 354
      Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
      cl11960
      Location:66 → 166
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.