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    SEMA4A semaphorin 4A [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 718191, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SEMA4Aprovided by VGNC
    Official Full Name
    semaphorin 4Aprovided by VGNC
    Primary source
    VGNC:VGNC:81565
    See related
    Ensembl:ENSMMUG00000004901
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SEMA4A in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (94788244..94822234, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (130751593..130786263)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 44 Neighboring gene uncharacterized LOC106992879 Neighboring gene small nucleolar RNA SNORA26 Neighboring gene SAP domain-containing ribonucleoprotein pseudogene Neighboring gene lamin A/C Neighboring gene mex-3 RNA binding family member A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    semaphorin-4A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      94788244..94822234 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028827849.1 → XP_028683682.1  semaphorin-4A isoform X3

      Conserved Domains (3) summary
      smart00423
      Location:423 → 468
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:493 → 565
      Ig; Immunoglobulin domain
      cl15693
      Location:28 → 422
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    2. XM_015111897.2 → XP_014967383.2  semaphorin-4A isoform X1

      UniProtKB/TrEMBL
      F6W8Q3, F6W8Q9, F7CJF8
      Related
      ENSMMUP00000038769.2, ENSMMUT00000045725.3
      Conserved Domains (3) summary
      smart00423
      Location:496 → 541
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:566 → 638
      Ig; Immunoglobulin domain
      cl15693
      Location:55 → 495
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    3. XM_015111900.2 → XP_014967386.2  semaphorin-4A isoform X4

      Conserved Domains (3) summary
      smart00423
      Location:397 → 442
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:467 → 539
      Ig; Immunoglobulin domain
      cl15693
      Location:1 → 396
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    4. XM_015111888.2 → XP_014967374.2  semaphorin-4A isoform X1

      UniProtKB/TrEMBL
      F6W8Q3, F6W8Q9, F7CJF8
      Conserved Domains (3) summary
      smart00423
      Location:496 → 541
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:566 → 638
      Ig; Immunoglobulin domain
      cl15693
      Location:55 → 495
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    5. XM_001116428.4 → XP_001116428.3  semaphorin-4A isoform X1

      UniProtKB/TrEMBL
      F6W8Q3, F6W8Q9, F7CJF8
      Conserved Domains (3) summary
      smart00423
      Location:496 → 541
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:566 → 638
      Ig; Immunoglobulin domain
      cl15693
      Location:55 → 495
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    6. XM_028827847.1 → XP_028683680.1  semaphorin-4A isoform X2

      Conserved Domains (3) summary
      smart00423
      Location:432 → 477
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:502 → 574
      Ig; Immunoglobulin domain
      cl15693
      Location:12 → 431
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
    Nucleotide Protein
    Heading Accession and Version

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