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    LCA5L lebercilin LCA5 like [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 715569, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LCA5Lprovided by VGNC
    Official Full Name
    lebercilin LCA5 likeprovided by VGNC
    Primary source
    VGNC:VGNC:74039
    See related
    Ensembl:ENSMMUG00000010407
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See LCA5L in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (7168226..7212117)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (7235813..7279672)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene beta-1,3-galactosyltransferase 5 Neighboring gene myosin light polypeptide 6-like Neighboring gene SH3 domain binding glutamate rich protein Neighboring gene uncharacterized LOC114676804 Neighboring gene guided entry of tail-anchored proteins factor 1 Neighboring gene small nucleolar RNA U13 Neighboring gene high mobility group nucleosome binding domain 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in intraciliary transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axoneme IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lebercilin-like protein
    Names
    LCA5L, lebercilin like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001194409.2 → NP_001181338.1  lebercilin-like protein

      See identical proteins and their annotated locations for NP_001181338.1

      Status: PROVISIONAL

      Source sequence(s)
      QNVO02000307
      UniProtKB/TrEMBL
      F7D2V2, G7MMR9
      Related
      ENSMMUP00000062773.1, ENSMMUT00000084400.1
      Conserved Domains (1) summary
      pfam15619
      Location:146 → 325
      Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      7168226..7212117
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028845058.1 → XP_028700891.1  lebercilin-like protein isoform X5

    2. XM_028845051.1 → XP_028700884.1  lebercilin-like protein isoform X1

      UniProtKB/TrEMBL
      G7MMR9
      Conserved Domains (1) summary
      pfam15619
      Location:195 → 374
      Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

    3. XM_015132856.2 → XP_014988342.1  lebercilin-like protein isoform X1

      UniProtKB/TrEMBL
      G7MMR9
      Conserved Domains (1) summary
      pfam15619
      Location:195 → 374
      Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

    4. XM_028845054.1 → XP_028700887.1  lebercilin-like protein isoform X1

      UniProtKB/TrEMBL
      G7MMR9
      Conserved Domains (1) summary
      pfam15619
      Location:195 → 374
      Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

    5. XM_028845052.1 → XP_028700885.1  lebercilin-like protein isoform X1

      UniProtKB/TrEMBL
      G7MMR9
      Conserved Domains (1) summary
      pfam15619
      Location:195 → 374
      Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

    6. XM_028845053.1 → XP_028700886.1  lebercilin-like protein isoform X1

      UniProtKB/TrEMBL
      G7MMR9
      Conserved Domains (1) summary
      pfam15619
      Location:195 → 374
      Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

    7. XM_028845050.1 → XP_028700883.1  lebercilin-like protein isoform X1

      UniProtKB/TrEMBL
      G7MMR9
      Conserved Domains (1) summary
      pfam15619
      Location:195 → 374
      Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

    8. XM_015132864.2 → XP_014988350.1  lebercilin-like protein isoform X1

      UniProtKB/TrEMBL
      G7MMR9
      Conserved Domains (1) summary
      pfam15619
      Location:195 → 374
      Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

    9. XM_015132855.2 → XP_014988341.1  lebercilin-like protein isoform X1

      UniProtKB/TrEMBL
      G7MMR9
      Conserved Domains (1) summary
      pfam15619
      Location:195 → 374
      Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

    10. XM_028845049.1 → XP_028700882.1  lebercilin-like protein isoform X1

      UniProtKB/TrEMBL
      G7MMR9
      Conserved Domains (1) summary
      pfam15619
      Location:195 → 374
      Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

    11. XM_015132866.2 → XP_014988352.1  lebercilin-like protein isoform X2

      UniProtKB/TrEMBL
      F7D2V2, G7MMR9
      Conserved Domains (1) summary
      pfam15619
      Location:146 → 325
      Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

    12. XM_028845055.1 → XP_028700888.1  lebercilin-like protein isoform X2

      UniProtKB/TrEMBL
      F7D2V2, G7MMR9
      Related
      ENSMMUP00000064113.1, ENSMMUT00000104372.1
      Conserved Domains (1) summary
      pfam15619
      Location:146 → 325
      Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

    13. XM_028845056.1 → XP_028700889.1  lebercilin-like protein isoform X3

      UniProtKB/TrEMBL
      G7MMR9
      Conserved Domains (1) summary
      pfam15619
      Location:44 → 223
      Lebercilin; Ciliary protein causing Leber congenital amaurosis disease

    14. XM_028845057.1 → XP_028700890.1  lebercilin-like protein isoform X4

      UniProtKB/TrEMBL
      G7MMR9
      Conserved Domains (1) summary
      pfam15619
      Location:16 → 195
      Lebercilin; Ciliary protein causing Leber congenital amaurosis disease
    Nucleotide Protein
    Heading Accession and Version

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