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    CUX1 cut like homeobox 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 574390, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CUX1provided by VGNC
    Official Full Name
    cut like homeobox 1provided by VGNC
    Primary source
    VGNC:VGNC:81298
    See related
    Ensembl:ENSMMUG00000021461
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Also known as
    CUTL1
    Orthologs
    human mouse all
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    Genomic context

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    See CUX1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (43963772..44436863)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (127457354..127713704)

    Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene myosin light chain 10 Neighboring gene uncharacterized LOC106997585 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene uncharacterized LOC106997589 Neighboring gene SH2B adaptor protein 2 Neighboring gene PRKR interacting protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Elevated gene expression levels distinguish human from non-human primate brains. Cáceres M, et al. Proc Natl Acad Sci U S A, 2003 Oct 28. PMID 14557539, Free PMC Article
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intra-Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CASP
    Names
    cut-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001261815.2 → NP_001248744.2  protein CASP

      Status: VALIDATED

      Source sequence(s)
      QNVO02000311
      UniProtKB/TrEMBL
      H9Z5N9, I2CWI1
      Conserved Domains (2) summary
      TIGR02168
      Location:107 → 375
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam08172
      Location:421 → 641
      CASP_C; CASP C terminal

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041756.1 Reference Mmul_10 Primary Assembly

      Range
      43963772..44436863
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028844758.1 → XP_028700591.1  protein CASP isoform X12

      UniProtKB/TrEMBL
      H9F9N5, H9YXU1
      Related
      ENSMMUP00000047233.2, ENSMMUT00000060394.2
      Conserved Domains (2) summary
      COG1196
      Location:107 → 371
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam08172
      Location:423 → 643
      CASP_C; CASP C terminal

    2. XM_028844759.1 → XP_028700592.1  protein CASP isoform X13

      UniProtKB/TrEMBL
      F7E6B9
      Conserved Domains (5) summary
      PHA03247
      Location:736 → 922
      PHA03247; large tegument protein UL36; Provisional
      TIGR02169
      Location:18 → 368
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      pfam02376
      Location:1111 → 1188
      CUT; CUT domain
      pfam00046
      Location:1236 → 1290
      Homeobox; Homeobox domain
      cl29137
      Location:1292 → 1390
      Trypan_PARP; Procyclic acidic repetitive protein (PARP)

    3. XM_028844752.1 → XP_028700585.1  protein CASP isoform X6

      UniProtKB/TrEMBL
      F7E6B9
      Conserved Domains (5) summary
      PHA03247
      Location:758 → 944
      PHA03247; large tegument protein UL36; Provisional
      TIGR02169
      Location:18 → 368
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      pfam02376
      Location:1133 → 1210
      CUT; CUT domain
      pfam00046
      Location:1258 → 1312
      Homeobox; Homeobox domain
      cl29137
      Location:1314 → 1412
      Trypan_PARP; Procyclic acidic repetitive protein (PARP)

    4. XM_028844755.1 → XP_028700588.1  protein CASP isoform X9

      UniProtKB/TrEMBL
      F7E6B9
      Conserved Domains (5) summary
      PHA03247
      Location:656 → 842
      PHA03247; large tegument protein UL36; Provisional
      TIGR02169
      Location:18 → 368
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      pfam02376
      Location:1031 → 1108
      CUT; CUT domain
      pfam00046
      Location:1156 → 1210
      Homeobox; Homeobox domain
      cl29137
      Location:1212 → 1310
      Trypan_PARP; Procyclic acidic repetitive protein (PARP)

    5. XM_028844748.1 → XP_028700581.1  protein CASP isoform X2

      UniProtKB/TrEMBL
      F7E6B9
      Conserved Domains (5) summary
      PHA03247
      Location:846 → 1032
      PHA03247; large tegument protein UL36; Provisional
      TIGR02169
      Location:108 → 457
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      pfam02376
      Location:1221 → 1298
      CUT; CUT domain
      pfam00046
      Location:1346 → 1400
      Homeobox; Homeobox domain
      cl29137
      Location:1402 → 1500
      Trypan_PARP; Procyclic acidic repetitive protein (PARP)

    6. XM_028844750.1 → XP_028700583.1  protein CASP isoform X4

      UniProtKB/TrEMBL
      F7E6B9
      Conserved Domains (5) summary
      PHA03247
      Location:825 → 1011
      PHA03247; large tegument protein UL36; Provisional
      TIGR02169
      Location:108 → 457
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      pfam02376
      Location:1200 → 1277
      CUT; CUT domain
      pfam00046
      Location:1325 → 1379
      Homeobox; Homeobox domain
      cl29137
      Location:1381 → 1479
      Trypan_PARP; Procyclic acidic repetitive protein (PARP)

    7. XM_028844749.1 → XP_028700582.1  protein CASP isoform X3

      UniProtKB/TrEMBL
      F7E6B9
      Conserved Domains (5) summary
      PHA03247
      Location:845 → 1031
      PHA03247; large tegument protein UL36; Provisional
      TIGR02168
      Location:122 → 451
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam02376
      Location:1220 → 1297
      CUT; CUT domain
      pfam00046
      Location:1345 → 1399
      Homeobox; Homeobox domain
      cl29137
      Location:1401 → 1499
      Trypan_PARP; Procyclic acidic repetitive protein (PARP)

    8. XM_028844747.1 → XP_028700580.1  protein CASP isoform X1

      UniProtKB/TrEMBL
      F7E6B9
      Conserved Domains (5) summary
      PHA03247
      Location:847 → 1033
      PHA03247; large tegument protein UL36; Provisional
      TIGR02169
      Location:108 → 457
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      pfam02376
      Location:1222 → 1299
      CUT; CUT domain
      pfam00046
      Location:1347 → 1401
      Homeobox; Homeobox domain
      cl29137
      Location:1403 → 1501
      Trypan_PARP; Procyclic acidic repetitive protein (PARP)

    9. XM_028844754.1 → XP_028700587.1  protein CASP isoform X8

      UniProtKB/TrEMBL
      F7E6B9
      Conserved Domains (5) summary
      PHA03247
      Location:745 → 931
      PHA03247; large tegument protein UL36; Provisional
      TIGR02168
      Location:122 → 453
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam02376
      Location:1120 → 1197
      CUT; CUT domain
      pfam00046
      Location:1245 → 1299
      Homeobox; Homeobox domain
      cl29137
      Location:1301 → 1399
      Trypan_PARP; Procyclic acidic repetitive protein (PARP)

    10. XM_028844756.1 → XP_028700589.1  protein CASP isoform X10

      UniProtKB/TrEMBL
      H9F9N5
      Conserved Domains (3) summary
      TIGR02168
      Location:200 → 453
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR04211
      Location:406 → 506
      SH3_and_anchor; SH3 domain protein
      pfam08172
      Location:512 → 727
      CASP_C; CASP C terminal

    11. XM_028844751.1 → XP_028700584.1  protein CASP isoform X5

      UniProtKB/TrEMBL
      F7E6B9
      Related
      ENSMMUP00000028274.4, ENSMMUT00000030213.4
      Conserved Domains (5) summary
      PHA03247
      Location:772 → 958
      PHA03247; large tegument protein UL36; Provisional
      TIGR02168
      Location:47 → 378
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam02376
      Location:1147 → 1224
      CUT; CUT domain
      pfam00046
      Location:1272 → 1326
      Homeobox; Homeobox domain
      cl29137
      Location:1328 → 1426
      Trypan_PARP; Procyclic acidic repetitive protein (PARP)

    12. XM_028844757.1 → XP_028700590.1  protein CASP isoform X11

      UniProtKB/TrEMBL
      F7E6D4, H9F9N5
      Related
      ENSMMUP00000028272.4, ENSMMUT00000030211.4
      Conserved Domains (3) summary
      TIGR02168
      Location:125 → 378
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      TIGR04211
      Location:331 → 431
      SH3_and_anchor; SH3 domain protein
      pfam08172
      Location:437 → 652
      CASP_C; CASP C terminal

    13. XM_028844753.1 → XP_028700586.1  protein CASP isoform X7

      UniProtKB/TrEMBL
      F7E6B9
      Conserved Domains (5) summary
      PHA03247
      Location:748 → 934
      PHA03247; large tegument protein UL36; Provisional
      TIGR02168
      Location:36 → 354
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam02376
      Location:1123 → 1200
      CUT; CUT domain
      pfam00046
      Location:1248 → 1302
      Homeobox; Homeobox domain
      cl29137
      Location:1304 → 1402
      Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    Nucleotide Protein
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