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    TCERG1 transcription elongation regulator 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 707912, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TCERG1provided by VGNC
    Official Full Name
    transcription elongation regulator 1provided by VGNC
    Primary source
    VGNC:VGNC:78389
    See related
    Ensembl:ENSMMUG00000023288
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See TCERG1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (143872406..143936298)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (144501273..144565159)

    Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 27 Neighboring gene POU class 4 homeobox 3 Neighboring gene G protein-coupled receptor 151 Neighboring gene protein phosphatase 2 regulatory subunit Bbeta Neighboring gene keratin, type II cytoskeletal 8 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription elongation regulator 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041759.1 Reference Mmul_10 Primary Assembly

      Range
      143872406..143936298
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015141130.2 → XP_014996616.2  transcription elongation regulator 1 isoform X1

      UniProtKB/TrEMBL
      A0A1D5Q9H3, A0A5F8AIK2
      Related
      ENSMMUP00000044691.2, ENSMMUT00000069818.2
      Conserved Domains (5) summary
      smart00441
      Location:1030 → 1094
      FF; Contains two conserved F residues
      smart00456
      Location:132 → 164
      WW; Domain with 2 conserved Trp (W) residues
      COG5104
      Location:421 → 1035
      PRP40; Splicing factor [RNA processing and modification]
      pfam05109
      Location:260 → 365
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      cl28929
      Location:323 → 413
      VirB10_like; VirB10 and similar proteins form part of core complex in Type IV secretion system (T4SS)

    2. XM_015141131.2 → XP_014996617.2  transcription elongation regulator 1 isoform X3

      UniProtKB/TrEMBL
      A0A5F8AIK2, F6VLB4
      Related
      ENSMMUP00000033921.3, ENSMMUT00000040892.3
      Conserved Domains (4) summary
      smart00441
      Location:1009 → 1073
      FF; Contains two conserved F residues
      smart00456
      Location:132 → 164
      WW; Domain with 2 conserved Trp (W) residues
      COG5104
      Location:400 → 1014
      PRP40; Splicing factor [RNA processing and modification]
      pfam03154
      Location:258 → 395
      Atrophin-1; Atrophin-1 family

    3. XM_001101428.3 → XP_001101428.2  transcription elongation regulator 1 isoform X2

      UniProtKB/TrEMBL
      A0A5F8AIK2, F7FFI0
      Related
      ENSMMUP00000030652.3, ENSMMUT00000032760.4
      Conserved Domains (5) summary
      smart00441
      Location:1013 → 1077
      FF; Contains two conserved F residues
      smart00456
      Location:132 → 164
      WW; Domain with 2 conserved Trp (W) residues
      COG5104
      Location:421 → 1018
      PRP40; Splicing factor [RNA processing and modification]
      pfam05109
      Location:260 → 365
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      cl28929
      Location:323 → 413
      VirB10_like; VirB10 and similar proteins form part of core complex in Type IV secretion system (T4SS)

    4. XM_001101519.3 → XP_001101519.2  transcription elongation regulator 1 isoform X4

      UniProtKB/TrEMBL
      A0A5F8AIK2
      Conserved Domains (4) summary
      smart00441
      Location:992 → 1056
      FF; Contains two conserved F residues
      smart00456
      Location:132 → 164
      WW; Domain with 2 conserved Trp (W) residues
      COG5104
      Location:400 → 997
      PRP40; Splicing factor [RNA processing and modification]
      pfam03154
      Location:258 → 395
      Atrophin-1; Atrophin-1 family

    5. XM_015141132.2 → XP_014996618.2  transcription elongation regulator 1 isoform X5

      UniProtKB/TrEMBL
      A0A1D5QR80
      Related
      ENSMMUP00000050558.2, ENSMMUT00000070109.2
      Conserved Domains (5) summary
      smart00456
      Location:132 → 164
      WW; Domain with 2 conserved Trp (W) residues
      COG5104
      Location:421 → 927
      PRP40; Splicing factor [RNA processing and modification]
      pfam05109
      Location:260 → 365
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam01846
      Location:919 → 966
      FF; FF domain
      cl28929
      Location:323 → 413
      VirB10_like; VirB10 and similar proteins form part of core complex in Type IV secretion system (T4SS)

    RNA

    1. XR_001445592.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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