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    ARID5B AT-rich interaction domain 5B [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 698639, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ARID5Bprovided by VGNC
    Official Full Name
    AT-rich interaction domain 5Bprovided by VGNC
    Primary source
    VGNC:VGNC:69854
    See related
    Ensembl:ENSMMUG00000000424
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See ARID5B in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (75885648..76079676, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (70637692..70831205, complement)

    Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 365 Neighboring gene rhotekin 2 Neighboring gene uncharacterized LOC114669983 Neighboring gene ciliary associated calcium binding coiled-coil 1 Neighboring gene uncharacterized LOC114669984

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-rich interactive domain-containing protein 5B
    Names
    AT rich interactive domain 5B (MRF1-like)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041762.1 Reference Mmul_10 Primary Assembly

      Range
      75885648..76079676 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028826603.1 → XP_028682436.1  AT-rich interactive domain-containing protein 5B isoform X3

      UniProtKB/TrEMBL
      A0A1D5QLF8, F7DFD0
      Related
      ENSMMUP00000048883.2, ENSMMUT00000063913.2
      Conserved Domains (2) summary
      pfam10243
      Location:334 → 560
      MIP-T3; Microtubule-binding protein MIP-T3
      cd16885
      Location:244 → 338
      ARID_ARID5B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 5B (ARID5B) and similar proteins

    2. XM_001093968.4 → XP_001093968.2  AT-rich interactive domain-containing protein 5B isoform X1

      UniProtKB/TrEMBL
      H9G0L3
      Related
      ENSMMUP00000000572.4, ENSMMUT00000000621.4
      Conserved Domains (2) summary
      pfam10243
      Location:411 → 637
      MIP-T3; Microtubule-binding protein MIP-T3
      cd16885
      Location:321 → 415
      ARID_ARID5B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 5B (ARID5B) and similar proteins

    3. XM_028826602.1 → XP_028682435.1  AT-rich interactive domain-containing protein 5B isoform X2

      UniProtKB/TrEMBL
      H9G0L3
      Conserved Domains (2) summary
      pfam10243
      Location:338 → 564
      MIP-T3; Microtubule-binding protein MIP-T3
      cd16885
      Location:248 → 342
      ARID_ARID5B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 5B (ARID5B) and similar proteins

    4. XM_028826604.1 → XP_028682437.1  AT-rich interactive domain-containing protein 5B isoform X4

      UniProtKB/TrEMBL
      H9G0L3
      Conserved Domains (2) summary
      pfam10243
      Location:222 → 448
      MIP-T3; Microtubule-binding protein MIP-T3
      cd16885
      Location:132 → 226
      ARID_ARID5B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 5B (ARID5B) and similar proteins

    5. XM_015147540.2 → XP_015003026.2  AT-rich interactive domain-containing protein 5B isoform X5

      UniProtKB/TrEMBL
      F7DFD0
      Conserved Domains (2) summary
      pfam10243
      Location:168 → 394
      MIP-T3; Microtubule-binding protein MIP-T3
      cd16885
      Location:78 → 172
      ARID_ARID5B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 5B (ARID5B) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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