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    SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 387254, updated on 10-Dec-2024

    Summary

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    Official Symbol
    SLC7A5P2provided by HGNC
    Official Full Name
    solute carrier family 7 member 5 pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:24951
    See related
    AllianceGenome:HGNC:24951
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    IMAA; MMAA
    Summary
    Predicted to enable transmembrane transporter activity. Predicted to be involved in L-alpha-amino acid transmembrane transport. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See SLC7A5P2 in Genome Data Viewer
    Location:
    16p12.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (21517893..21520444, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (21452651..21455202, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (21529214..21531765, complement)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene SMG1 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21503231-21503732 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:21512787-21513303 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21513304-21513819 Neighboring gene uncharacterized LOC124903662 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21513820-21514336 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_43023 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21520603-21521153 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21522758-21523594 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21523595-21524430 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10556 Neighboring gene microRNA 3680-1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21526656-21527164 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:21529065-21529231 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21531393-21532126 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21532127-21532859 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21532860-21533594 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21535062-21535794 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21536490-21537300 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21537301-21538111 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21538112-21538922 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_43111 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21549325-21549826 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21549827-21550326 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:21552333-21553071 Neighboring gene carbonic anhydrase 5A pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10557 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21561118-21561618 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21562361-21562862 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:21565604-21566414 Neighboring gene uncharacterized LOC101927814 Neighboring gene methyltransferase 9, His-X-His N1(pi)-histidine

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Up-regulated expression of a novel gene in activated human peripheral blood mononuclear cells that is a truncated paralog of the human system L-amino acid transporter 1. Ito M, et al. Int J Biochem Cell Biol, 2002 Sep. PMID 12009310
    2. High-throughput analyses of hnRNP H1 dissects its multi-functional aspect. Uren PJ, et al. RNA Biol, 2016. PMID 26760575, Free PMC Article
    3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Choudhury NR, et al. BMC Biol, 2017 Nov 8. PMID 29117863, Free PMC Article
    4. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • LAT1-3TM protein 2
    • SLC7A5 pseudogene
    • hLAT1-3TM
    • solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2
    • solute carrier family 7 (cationic amino acid transporter, y+ system), member 5 pseudogene 2

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in L-alpha-amino acid transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002594.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AC005632

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      21517893..21520444 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_017852933.1 Reference GRCh38.p14 PATCHES

      Range
      1584373..1586924
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      21452651..21455202 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001031629.1: Suppressed sequence

      Description
      NM_001031629.1: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.

    2. NM_199182.2: Suppressed sequence

      Description
      NM_199182.2: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9GIP4.2 GenPept UniProtKB/Swiss-Prot:Q9GIP4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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    Research Materials