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    LINC02676 long intergenic non-protein coding RNA 2676 [ Homo sapiens (human) ]

    Gene ID: 105755953, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02676provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2676provided by HGNC
    Primary source
    HGNC:HGNC:54170
    See related
    Ensembl:ENSG00000234752 AllianceGenome:HGNC:54170
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02676 in Genome Data Viewer
    Location:
    10p14
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (8897989..8914596)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (8900073..8916684)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (8939952..8956559)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:8697559-8698758 Neighboring gene uncharacterized LOC105376400 Neighboring gene RNA, 5S ribosomal pseudogene 299 Neighboring gene uncharacterized LOC101928272 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:9315328-9315828 Neighboring gene long intergenic non-protein coding RNA 709 Neighboring gene NANOG hESC enhancer GRCh37_chr10:9384821-9385337 Neighboring gene long intergenic non-protein coding RNA 2663 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2989 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2990 Neighboring gene heat shock protein 90 alpha family class B member 7, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131944.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC044784, AI393622
      Related
      ENST00000447297.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      8897989..8914596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      8900073..8916684
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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