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    LINC01815 long intergenic non-protein coding RNA 1815 [ Homo sapiens (human) ]

    Gene ID: 100507201, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC01815provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1815provided by HGNC
    Primary source
    HGNC:HGNC:52619
    See related
    Ensembl:ENSG00000235519 AllianceGenome:HGNC:52619
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 3.3) See more
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    Genomic context

    See LINC01815 in Genome Data Viewer
    Location:
    2p12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (81461359..81466946, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (81461912..81467499, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (81688483..81694070, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:81420933-81421434 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:81421435-81421934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:81433285-81433784 Neighboring gene ANKRD11 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chr2:81622884-81623398 Neighboring gene CHMP4A pseudogene 1 Neighboring gene uncharacterized LOC102724542 Neighboring gene RNA, 5S ribosomal pseudogene 99 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:81884908-81886107 Neighboring gene uncharacterized LOC105374828

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110161.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA429605, AA432216, AC012075
      Related
      ENST00000729821.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      81461359..81466946 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      81461912..81467499 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)