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    Chordc1 cysteine and histidine rich domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 66917, updated on 9-Dec-2024

    Summary

    Official Symbol
    Chordc1provided by MGI
    Official Full Name
    cysteine and histidine rich domain containing 1provided by MGI
    Primary source
    MGI:MGI:1914167
    See related
    Ensembl:ENSMUSG00000001774 AllianceGenome:MGI:1914167
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Chp-1; morgana; 1110001O09Rik
    Summary
    Enables ADP binding activity; ATP binding activity; and zinc ion binding activity. Involved in several processes, including chaperone-mediated protein folding; negative regulation of Rho-dependent protein serine/threonine kinase activity; and regulation of centrosome duplication. Is expressed in brain; olfactory epithelium; trigeminal ganglion; and vomeronasal organ. Used to study chronic myeloid leukemia. Orthologous to human CHORDC1 (cysteine and histidine rich domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 22.5), placenta adult (RPKM 16.5) and 27 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Chordc1 in Genome Data Viewer
    Location:
    9 A2; 9 7.01 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (18203563..18225296)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (18292267..18314000)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 48856 Neighboring gene STARR-seq mESC enhancer starr_23414 Neighboring gene STARR-seq mESC enhancer starr_23415 Neighboring gene STARR-seq mESC enhancer starr_23416 Neighboring gene predicted gene, 51667 Neighboring gene predicted gene 7692 Neighboring gene amyloid beta (A4) precursor protein-binding, family B, member 1 pseudogene Neighboring gene N-acetylated alpha-linked acidic dipeptidase 2 Neighboring gene STARR-seq mESC enhancer starr_23417 Neighboring gene upstream binding transcription factor, RNA polymerase I-like 1 pseudogene

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (4) 
    • Targeted (1)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    cysteine and histidine-rich domain-containing protein 1
    Names
    CHORD domain-containing protein 1
    CHORD-containing protein 1
    cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1
    protein morgana

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025844.2NP_080120.1  cysteine and histidine-rich domain-containing protein 1

      See identical proteins and their annotated locations for NP_080120.1

      Status: PROVISIONAL

      Source sequence(s)
      AK003259
      Consensus CDS
      CCDS22842.1
      UniProtKB/Swiss-Prot
      Q9CSI5, Q9D1P4
      Related
      ENSMUSP00000001825.8, ENSMUST00000001825.9
      Conserved Domains (2) summary
      cd06488
      Location:230316
      p23_melusin_like; p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta ...
      pfam04968
      Location:364
      CHORD; CHORD

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      18203563..18225296
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)