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    LINC02702 long intergenic non-protein coding RNA 2702 [ Homo sapiens (human) ]

    Gene ID: 101929011, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC02702provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2702provided by HGNC
    Primary source
    HGNC:HGNC:54217
    See related
    Ensembl:ENSG00000237937 AllianceGenome:HGNC:54217
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LASER
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02702 in Genome Data Viewer
    Location:
    11q23.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (116639422..116658252)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (116653494..116672338)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (116510139..116528969)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116369918-116370610 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116375709-116376258 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116377349-116377849 Neighboring gene long intergenic non-protein coding RNA 2151 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116406562-116407062 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116407063-116407563 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:116451429-116452038 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116452039-116452648 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:116452758-116452938 Neighboring gene uncharacterized LOC107984372 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116507034-116507534 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116511441-116512270 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116512271-116513100 Neighboring gene VISTA enhancer hs1632 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:116558341-116558903 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:116558904-116559465 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:116580386-116581272 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3921 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3922 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3923 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5554 Neighboring gene BUD13 homolog Neighboring gene BUD13 divergent transcript Neighboring gene ZPR1 zinc finger

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.
    EBI GWAS Catalog

    General gene information

    Other Names

    • Lipid Associated Single nucleotide polymorphism gEne Region

    Clone Names

    • AP000770.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135069.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP000770, BX093419
      Related
      ENST00000444123.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      116639422..116658252
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      116653494..116672338
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)